Tcon035293.2
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:94837636-94850997[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-12 5.5e-09 36.9 0.0 1 39 428 467 428 471 0.92 2 4 4.7e-13 1.2e-09 39.0 0.1 2 39 483 520 482 523 0.94 3 4 1.7e-17 4.4e-14 53.2 0.0 1 45 537 582 537 582 0.97 4 4 7.4e-19 1.9e-15 57.6 0.0 1 43 589 632 589 633 0.96
Sequence Information
- Coding Sequence
- ATGAATAcaaatatgaatattacaataaaacaagAGCCAATCGAAGAGTATTATCATGATGCTGGACATAGTGTAACTGTCAAACATGAACCAATTGATACTGGATACAATTATGCGATACAATATGTTACAACGGCAAATGGTGAATTGTATCAGATTAAACAAGAGCCAGCAGagAGTCTTCTTAAAACTGCGGAACATCTAAAAATTAAAGGTCTCTGTGATATAAGTGAAGAATATCCAGAACCGTGtgttaaacgaaaatttaaaaatagtaataataataataatcaatcaaatcaaaggAATTATCatataagtaataataataatttgaatagtagtaacaataataataataataataacagtaatacaGAAGACATAAATAGTAAACTAAGTAATAGAACaaatgaatcaataaataatcaaaGTGGTAATAATTTAGTTAAAGATCATAATGATACATCACAGTCGTCACCTTTAACATTGGAAACACGTAGTAATTTAGGAAATAGTAGTGATAATCAACGGGATAAAAATATGACGAGTCTCGGAATGGGAATGGGCATGaATGGGTCCTTGATGGGTGTATCGATGCAGTTTTTAGATTTTGCACCTGAACCACCGGCACCATCGGCAACACCAGTCACGGAACACATTGAGTTGACTACAaATCTGCACGGCCAGGAGATACGACGGAAGTTTGAGACGCTTCGATCATTGGATCCGAGTGACAATTTAGATGTGGACCGTATATCACAGCATTCAATACATCATTTGACGTCGTCGCCGCATCATAGTGAAAACAGTCGGGAGCATTCTCAACCACTGGACACGATTGTAATAAAACAGGATTTGGACAGAGATTCAGCATCACAGCAGGCCCAagaacaacaccaacaacaacaacttcagcaacaacagcagcaacaacaacagcagcagcaacagcagcagcaacaacaacaacagcagcagcaacaacaacagcagcagcagtcAGAACAGTCACAATCTCAGTCATCACAACATGGTAATCAGAGTAGTCGATCTAGTAATATGGACGTGGATCAATCGAGTGGATTGGAACATGAACAATTGCATGGTATGATTATTACACCCGAGATTGTGACTATGATGACGCCTACCCATATGGGTATGTACAATTTACATACAAGTGaggaaaataaaatgattttacctAGTGAAATTAAAGTAGAATATACTGAATTAACCTCTCCTAATGATCCACGGAACGCAGCTGGACCAAAAACGTGGACCCCCGATGATATGGAATCAGCCCTCGATGCATTGCGAACACATCACATGAGTTTATCAAAAGCTTCCATTACATACGGTATACCACCTACAACTTTATGGCAAAGAGCCCATCGGCTTGGTATAGACACCCCCAAAAAAGAAGGACCAAATAAATCGTGGAATGAGGATTCATTAAATAGTGCTCTTGATGCTTTACGTACCGGTCAAATATCAGCGAATAAAGCCTCGAAAGCATATGGCATACCATCATCGACACTTTATAAAATTGCACGACGTGAAGGTATTCGTCTAGCGGCACCATTTAATGCTGCCCCAACGACATGGACACAAGAAGATTTGGAACGTGCATTAGAGGCAATTCGTAGTGGTCAAGCATCGGTACAAAAAGCTAGTGTAGAATTTGGTATACCAACGGGAACATTGTATGGAAGATGTAAACGAGAAGGGATCGAATTGTCGAGGTCGAATCCTACGCCGTGGTCTGAAGATGCTATGATGGAGGCTTTAGAAGCTGttcggATAGGTCAAATGTCGATAAATCAGGCTGCTATACATTATAACCTGCCATATAGTTCACTGTATGGTCGCTTTAAAAGGGGTAAATACGATACAAATATTGGTGAAGGGCATCTAATCGATACGAGTCCAGAAAATACATATAATAACGTATTTCAGCAACAGTATAGTCCTGTCATGTTAACACATCAGCCACAAACACCACAGCCTCATCAATCACAGCAGCAaccacaacagcaacaacaacagcaacaacaacagcagcagcaacaacaacagcaacaacaacaacaacaacaacagcagcaacaacagaTACCACAATTAATAGTGCATCAATCACAGAATTCGAATAGTCAACCGGAGTTATATTTAATAacaccaaaacaggaaagaagttga
- Protein Sequence
- MNTNMNITIKQEPIEEYYHDAGHSVTVKHEPIDTGYNYAIQYVTTANGELYQIKQEPAESLLKTAEHLKIKGLCDISEEYPEPCVKRKFKNSNNNNNQSNQRNYHISNNNNLNSSNNNNNNNNSNTEDINSKLSNRTNESINNQSGNNLVKDHNDTSQSSPLTLETRSNLGNSSDNQRDKNMTSLGMGMGMNGSLMGVSMQFLDFAPEPPAPSATPVTEHIELTTNLHGQEIRRKFETLRSLDPSDNLDVDRISQHSIHHLTSSPHHSENSREHSQPLDTIVIKQDLDRDSASQQAQEQHQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSEQSQSQSSQHGNQSSRSSNMDVDQSSGLEHEQLHGMIITPEIVTMMTPTHMGMYNLHTSEENKMILPSEIKVEYTELTSPNDPRNAAGPKTWTPDDMESALDALRTHHMSLSKASITYGIPPTTLWQRAHRLGIDTPKKEGPNKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRSGQASVQKASVEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDTNIGEGHLIDTSPENTYNNVFQQQYSPVMLTHQPQTPQPHQSQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQIPQLIVHQSQNSNSQPELYLITPKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455565;
- 90% Identity
- iTF_01455565;
- 80% Identity
- -