Tshe019113.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema shepardi
Gene Symbol
-
Assembly
GCA_902151425.1
Location
CABFVX010001410.1:1-17086[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.3e-05 0.0034 20.1 1.0 1 23 191 213 191 213 0.96
2 18 0.0096 2.6 11.0 3.3 1 20 219 238 219 241 0.93
3 18 5e-06 0.0014 21.4 1.2 1 23 247 269 247 269 0.99
4 18 6.6e-05 0.018 17.9 3.5 1 21 275 295 275 297 0.94
5 18 0.00013 0.036 16.9 4.7 1 23 303 325 303 325 0.99
6 18 2.6e-05 0.0071 19.1 5.3 1 23 331 353 331 353 0.97
7 18 1.3e-06 0.00035 23.2 3.9 1 23 359 381 359 381 0.96
8 18 9.7e-08 2.6e-05 26.8 2.7 1 23 387 409 387 409 0.98
9 18 7.2e-05 0.02 17.7 6.7 1 23 415 437 415 437 0.97
10 18 7.1e-05 0.019 17.7 5.7 1 23 443 465 443 465 0.97
11 18 5.9e-07 0.00016 24.3 2.9 1 23 471 493 471 493 0.98
12 18 8.8e-06 0.0024 20.6 7.8 1 23 499 521 499 521 0.98
13 18 2.8e-05 0.0076 19.0 9.1 1 23 527 549 527 549 0.98
14 18 8.9e-06 0.0024 20.6 7.7 1 23 555 577 555 577 0.98
15 18 0.0039 1.1 12.3 10.6 1 21 583 603 583 605 0.94
16 18 0.00025 0.067 16.1 0.2 1 23 611 633 611 633 0.97
17 18 0.032 8.7 9.4 4.5 1 23 643 665 643 665 0.98
18 18 6.9e-07 0.00019 24.1 0.9 1 23 671 693 671 693 0.96

Sequence Information

Coding Sequence
CTTGCTCAACAGCAACAACAGCAGCCTCATCAGCACCAACAACAGCCTCATCAACACCAGCAGGGTCAAACTGAGGCGAATAGAGAACTCCAACAATCCCAAGAGGTGGGTACACAAATGGACTCAGCAGGTGCCTCTGAGGTGAAGGATGAGAAAACTTCAAGCAGTGGGCCATGTGCAAAGGAACTGCGTAGTTTGCCCTGCACAGCTGGATTCCCTGTGCAAGATATGAAAGGTCACATGATGGACATCAGGACTCCAGATGGTAGCATTGTTAAGATCAGTGCTCCTGGCAATGGCGACCAGGAGTTGAGCAAGACCCTCGGTGTGGAGATGGTTCAGAACATGTATAAGGTCAATGTTGAAGATATCAACCAACTCCTTGCCTATCATGAGGTTTTCGGAAAGCTTCAGAATGAGATGGCAGCTGCTGGCGTCCCTGCACAGACTACCCCAACTACCTCAAGCACAAGTGGGACTGGGGTTAATAAATCATGTACTGGCGAACCGTGCTCTACCAATAGCAGTGTGACCACCTTACCAACTGCAGTCATTACCACTCCAGGCACGCATATCTGCGACATCTGTGGCAAGATTTTCCCTTTCCGGTACCAACTGATAGTCCATCGCCGCTACCACACTGAGAGGAAGCCATTTACTTGTCAGGTATGTGGGAAAGCCTTCACATGTGCTGCAGAACTCACACGACATGGGAAATGCCACCTTGGTGGCAGCATGTACACATGTTCTGTTTGTTTCCACGTATTTGCCAATGCAGCTAGCCTGGAGCGTCATATGAAAAGACATGCAACAGACAAACCATATGCGTGCTCGGTGTGCGGGAAATCATTTGCTCGCAAAGAGCATTTGGACAATCATACAAGGTGCCACACAGGTGAGACGCCCTATCGTTGTCAGTTCTGTGCCAAGACATTCACACGCAAAGAACATATGGTTAATCATGTACGCAAGCACACAGGCGAGACCCCCCATCGCTGTGATATCTGCAAAAAATCATTCACTCGCAAGGAGCATTTCATGAACCATGTAATGTGGCACACAGGTGAGACACCCCACGCCTGTCAGGTTTGCGGCAAAAAGTACACAAGAAAAGAACACTTGGCCAATCACATGCGCTCCCACACCAATGACACACCCTTTCGCTGCGAGATCTGTGGCAAATCATTCACACGGAAGGAGCATTTCACGAACCACATCATGTGGCACACAGGCGAGACGCCGCATCGCTGTGACTTCTGCTCCAAGACTTTCACACGCAAGGAGCACCTGCTGAATCATGTCCGGCAGCATACGGGTGAGTCCCCCCATCGCTGCGGCTTCTGCTCCAAGTCTTTCACTCGCAAGGAGCACTTGGTGAATCATGTGCGCCAACATACTGGTGAGACCCCTTTCCGGTGCCAGTACTGCCCAAAGGCGTTCACACGCAAAGACCATCTGGTGAATCACGTTCGCCAGCACACAGGTGAGTCCCCCCACAAGTGTCAGTATTGCACCAAGTCGTTCACGCGCAAAGAGCACCTGACAAACCACGTGCGTCAGCACACGGGCGAGTCCCCCCATCGCTGCCACTTCTGTTCGAAATCCTTTACTCGCAAAGAGCATCTGACCAACCATGTGCGCATCCACACAGGTGAGTCGCCGCACCGCTGTGAGTTCTGCAACAAGACGTTCACACGCAAGGAACATCTGACCAACCACTTGCGCCAGCACACAGGAGAGACACCTCATTGCTGCCATGTCTGCTCCAAACCCTTCACACGCAAAGAGCACCTTGTCAACCACATGCGTTGTCACACGGGTGAGCGCCCCTTCGCTTGCCAGGAATGTGGCAAGGCATTCCCACTCAAGGGAAACTTGCTCTTCCATCAGCGCTCCCACAACAAGGGTGCCGCTGCTGAGCGACCTTTTCGCTGTGACCTTTGTCCCAAGGACTTCATGTGTAAGGGCCACCTAGTTTCTCATCGGCGAAGTCACTCCGGAGACCGGCCCCATGCCTGTCCAGACTGTGGCAAAACATTTGTGGAGAAGGGCAACATGCTACGGCACCTTCGTAAGCACTCTGCAGATGGCCAGAGCCTTCATAACCCACCAGGAGGTGTGGTGGTGCCACCCTCACATCACCTGCAGCAGCACCATCCCGTGCCCCCACATGGACCTGTGGTTGTTCCCACGCCTAACGCTGCTGTGCTTTCTACCTACTGA
Protein Sequence
LAQQQQQQPHQHQQQPHQHQQGQTEANRELQQSQEVGTQMDSAGASEVKDEKTSSSGPCAKELRSLPCTAGFPVQDMKGHMMDIRTPDGSIVKISAPGNGDQELSKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMAAAGVPAQTTPTTSSTSGTGVNKSCTGEPCSTNSSVTTLPTAVITTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCSVCFHVFANAASLERHMKRHATDKPYACSVCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLVNHMRCHTGERPFACQECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHSADGQSLHNPPGGVVVPPSHHLQQHHPVPPHGPVVVPTPNAAVLSTY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446810;
90% Identity
iTF_01446810;
80% Identity
iTF_01446810; iTF_01448784; iTF_01445845;