Tdou006489.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000345.1:92374-110266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-05 0.0032 20.1 1.0 1 23 211 233 211 233 0.96 2 18 0.01 2.5 11.0 3.3 1 20 239 258 239 261 0.93 3 18 5.4e-06 0.0013 21.3 1.2 1 23 267 289 267 289 0.99 4 18 7.1e-05 0.017 17.8 3.5 1 21 295 315 295 317 0.94 5 18 0.00014 0.034 16.9 4.7 1 23 323 345 323 345 0.99 6 18 2.8e-05 0.0067 19.1 5.3 1 23 351 373 351 373 0.97 7 18 1.4e-06 0.00033 23.2 3.9 1 23 379 401 379 401 0.96 8 18 1e-07 2.5e-05 26.7 2.7 1 23 407 429 407 429 0.98 9 18 7.8e-05 0.018 17.7 6.7 1 23 435 457 435 457 0.97 10 18 7.7e-05 0.018 17.7 5.7 1 23 463 485 463 485 0.97 11 18 6.4e-07 0.00015 24.3 2.9 1 23 491 513 491 513 0.98 12 18 9.5e-06 0.0023 20.6 7.8 1 23 519 541 519 541 0.98 13 18 3e-05 0.0071 19.0 9.1 1 23 547 569 547 569 0.98 14 18 9.6e-06 0.0023 20.6 7.7 1 23 575 597 575 597 0.98 15 18 0.0042 0.99 12.2 10.6 1 21 603 623 603 625 0.94 16 18 0.00027 0.063 16.0 0.2 1 23 631 653 631 653 0.97 17 18 0.034 8.2 9.4 4.5 1 23 663 685 663 685 0.98 18 18 7.4e-07 0.00018 24.0 0.9 1 23 691 713 691 713 0.96
Sequence Information
- Coding Sequence
- ATGTCAAAACCTGCAAGGCAACAGGTCCCTTTCCAGGATCTAGATGGCTGCCCCTTTGGGCTTGCTCAACAGCAACAACAGCAGCCTCATCAGCACCAACAACAGCCTCATCAACACCAGCAGGGTCAAACTGAGGCGAATAGAGAACTCCAACAATCCCAAGAAGTGGGTACACAAATGGACTCAGCAGGTGCCTCTGAGGTGAAGGATGAGAAAACTTCAAGCAGTGGGCCATGTGCAAAGGAACTGCGTAGCTTGCCCTGCACAGCTGGATTCCCTGTGCAAGATATGAAAGGTCACATGATGGACATCAGGACTCCAGATGGTAGCATTGTTAAGATCAGTGCTCCTGGCAATGGCGACCAGGAGTTGAGCAAGACCCTCGGTGTGGAGATGGTTCAGAACATGTATAAGGTCAATGTTGAAGATATCAACCAACTCCTTGCCTATCATGAGGTTTTCGGAAAGCTTCAGAATGAGATGGCAGCTGCTGGCGTCCCTGCACAGACTACCCCAACCACCTCAAGCACAAGTGGGACTGGGGTTAATAAATCATGTACTGGCGAACCGTGCTCTACCAATAGCAGTGTGACCACCTTACCAACTGCAGTCATTACCACTCCAGGCACGCATATCTGCGACATCTGTGGCAAGATTTTCCCTTTCCGGTACCAACTGATAGTCCATCGCCGCTACCACACTGAGAGGAAGCCATTTACTTGTCAGGTATGTGGGAAAGCCTTCACATGTGCTGCAGAGCTCACACGACATGGGAAATGCCACCTTGGTGGCAGCATGTACACATGTTCTGTTTGTTTCCACGTGTTTGCCAACGCAGCTAGCCTGGAGCGTCATATGAAAAGACATGCAACAGACAAACCATATGCGTGCTCGGTGTGCGGGAAATCATTTGCTCGCAAAGAGCATTTGGACAATCATACAAGGTGCCACACAGGTGAGACGCCCTATCGTTGTCAGTTCTGTGCCAAGACATTCACACGCAAAGAACATATGGTCAATCATGTACGCAAGCACACAGGCGAGACCCCCCATCGCTGTGATATCTGCAAAAAATCATTCACTCGCAAGGAGCATTTCATGAACCATGTAATGTGGCACACAGGTGAGACACCCCACGCCTGTCAGGTTTGCGGCAAAAAGTACACAAGAAAAGAACACTTGGCCAATCACATGCGCTCCCACACCAATGACACACCCTTTCGCTGCGAGATCTGTGGAAAATCATTCACACGGAAGGAGCATTTCACGAACCACATCATGTGGCACACAGGCGAGACGCCGCATCGCTGTGACTTCTGCTCCAAGACTTTCACACGCAAGGAGCACCTGCTGAATCATGTCCGGCAGCATACGGGTGAGTCCCCCCATCGCTGCGGCTTCTGCTCCAAGTCTTTCACTCGCAAGGAGCACTTGGTGAATCATGTGCGCCAACATACTGGTGAGACCCCTTTCCGGTGCCAGTACTGCCCAAAGGCGTTCACACGCAAAGACCATCTGGTGAATCACGTTCGCCAGCACACAGGTGAGTCCCCCCACAAGTGTCAGTATTGCACCAAGTCGTTCACGCGCAAAGAGCACCTGACAAACCACGTGCGTCAGCACACGGGCGAGTCCCCCCATCGCTGCCACTTCTGTTCGAAATCCTTTACTCGCAAAGAGCATCTGACCAACCATGTGCGCATCCACACAGGTGAGTCGCCGCACCGCTGTGAGTTCTGCAACAAGACGTTCACACGCAAGGAACATCTGACCAACCACTTGCGCCAGCACACAGGAGAGACACCTCATTGCTGCCATGTGTGCTCCAAACCCTTCACACGCAAAGAGCACCTTGTCAACCACATGCGTTGTCACACGGGTGAGCGCCCCTTCGCTTGCCAGGAATGTGGCAAGGCATTCCCACTCAAGGGAAACTTGCTCTTCCATCAGCGCTCCCACAACAAGGGTGCCGCTGCTGAGCGACCTTTTCGCTGTGACCTTTGTCCCAAGGACTTCATGTGTAAAGGCCACCTAGTTTCTCATCGGCGAAGTCACTCCGGAGACCGGCCCCATGCCTGTCCAGACTGTGGCAAAACATTTGTGGAGAAGGGCAACATGCTACGGCACCTTCGTAAGCACTCTGCAGATGGCCAGAGCCTTCATAACCCACCAGGAGGTGTGGTGGTGCCACCCTCACATCACCTGCAGCAGCACCATCCCGTGCCCCCACATGGACCTGTGGTTGTTCCCACGCCTAACGCTGCCGTGCTTTCTACCTACTGA
- Protein Sequence
- MSKPARQQVPFQDLDGCPFGLAQQQQQQPHQHQQQPHQHQQGQTEANRELQQSQEVGTQMDSAGASEVKDEKTSSSGPCAKELRSLPCTAGFPVQDMKGHMMDIRTPDGSIVKISAPGNGDQELSKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMAAAGVPAQTTPTTSSTSGTGVNKSCTGEPCSTNSSVTTLPTAVITTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCSVCFHVFANAASLERHMKRHATDKPYACSVCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLVNHMRCHTGERPFACQECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHSADGQSLHNPPGGVVVPPSHHLQQHHPVPPHGPVVVPTPNAAVLSTY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450793; iTF_01448784; iTF_01445845;
- 90% Identity
- iTF_01450793; iTF_01448784; iTF_01445845;
- 80% Identity
- iTF_01450793;