Tcri022448.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema cristinae
Gene Symbol
-
Assembly
GCA_002928295.1
Location
CM009479.1:62745495-62760827[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.2e-05 0.0018 20.1 1.0 1 23 206 228 206 228 0.96
2 18 0.0091 1.3 11.0 3.3 1 20 234 253 234 256 0.93
3 18 4.8e-06 0.00069 21.3 1.2 1 23 262 284 262 284 0.99
4 18 6.2e-05 0.0091 17.8 3.5 1 21 290 310 290 312 0.94
5 18 0.00013 0.018 16.9 4.7 1 23 318 340 318 340 0.99
6 18 2.5e-05 0.0036 19.1 5.3 1 23 346 368 346 368 0.97
7 18 1.2e-06 0.00018 23.2 3.9 1 23 374 396 374 396 0.96
8 18 9.2e-08 1.3e-05 26.7 2.7 1 23 402 424 402 424 0.98
9 18 6.8e-05 0.01 17.7 6.7 1 23 430 452 430 452 0.97
10 18 6.8e-05 0.0099 17.7 5.7 1 23 458 480 458 480 0.97
11 18 5.6e-07 8.2e-05 24.3 2.9 1 23 486 508 486 508 0.98
12 18 8.3e-06 0.0012 20.6 7.8 1 23 514 536 514 536 0.98
13 18 2.6e-05 0.0039 19.0 9.1 1 23 542 564 542 564 0.98
14 18 8.4e-06 0.0012 20.6 7.7 1 23 570 592 570 592 0.98
15 18 0.0037 0.54 12.3 10.6 1 21 598 618 598 620 0.94
16 18 0.00023 0.034 16.0 0.2 1 23 626 648 626 648 0.97
17 18 0.03 4.4 9.4 4.5 1 23 658 680 658 680 0.98
18 18 6.5e-07 9.6e-05 24.1 0.9 1 23 686 708 686 708 0.96

Sequence Information

Coding Sequence
ATGCTTAAGACTGTCCTCATTGAGGCACTATATCAAATTGCGCAGCTTGCTCAACAGCAACAACAGCAGCCTCATCAGCACCAACAACAGCCTCATCAACACCAGCAAGGTCAAACTGAGGCGAATAGAGAACTCCAACAATCCCAAGAGGTGGGTACACAAATGGACTCAGCAGGTGCCTCTGAGGTGAAGGATGAGAAAACTTCAAGCAGTGGGCCATGTGCAAAGGAACTGCGTAGCTTGCCCTGCACAGCTGGATTCCCTGTGCAAGATATGAAAGGTCACATGATGGACATCAGGACTCCAGATGGTAGCATTGTTAAAATCAGTGCTCCTGGCAATGGCGACCAGGAGTTGAGCAAGACCCTTGGTGTGGAGATGGTTCAGAACATGTATAAGGTCAATGTTGAAGATATCAACCAACTCCTTGCCTATCATGAGGTTTTCGGAAAGCTCCAGAATGAGATGGCAGCTGCTGGCGTCCCTGCACAGACTACCCCAACCACCTCAAGTACAAGTGGGACTGGGGTTAATAAATCATGTACTGGCGAACCGTGCTCTACCAATAGCAGTGTGACCACCTTACCAACTGCAGTCATCACCACTCCAGGCACGCATATCTGCGACATCTGTGGCAAGATTTTCCCTTTCCGGTACCAACTGATAGTCCATCGCCGCTACCACACTGAGAGGAAGCCATTTACTTGTCAGGTATGTGGGAAAGCCTTCACATGTGCTGCAGAACTCACACGACATGGGAAATGCCACCTTGGTGGCAGCATGTACACATGTTCTGTTTGTTTCCACGTGTTTGCCAACGCAGCTAGCCTGGAGCGTCATATGAAAAGACATGCAACAGACAAACCATATGCGTGCTCGGTGTGCGGGAAATCATTTGCTCGCAAAGAGCATTTGGACAATCATACAAGGTGCCACACAGGTGAGACGCCCTATCGTTGTCAGTTCTGTGCCAAGACATTCACACGCAAAGAACACATGGTTAATCATGTACGCAAGCACACAGGCGAGACCCCCCATCGCTGTGATATCTGCAAAAAATCATTCACTCGCAAGGAGCATTTCATGAACCATGTAATGTGGCACACAGGTGAGACACCCCATGCCTGTCAGGTTTGCGGCAAAAAGTACACAAGAAAAGAACACTTGGCCAATCACATGCGCTCCCACACCAATGACACACCCTTTCGCTGCGAGATCTGTGGCAAATCATTCACACGGAAGGAGCATTTCACGAACCACATCATGTGGCACACAGGCGAGACGCCGCATCGCTGTGACTTCTGCTCCAAGACTTTCACACGCAAGGAGCACCTGCTGAATCATGTCCGGCAGCATACGGGTGAGTCCCCCCATCGCTGCGGCTTCTGCTCCAAGTCTTTCACTCGCAAGGAGCACTTGGTGAATCATGTGCGCCAACATACTGGTGAGACCCCTTTCCGGTGCCAGTACTGCCCAAAGGCGTTCACACGCAAAGACCATCTGGTGAATCACGTTCGCCAGCACACAGGTGAGTCCCCCCACAAGTGTCAGTATTGCACCAAGTCGTTCACGCGCAAAGAGCACCTGACAAACCACGTGCGTCAGCACACGGGCGAGTCCCCCCATCGCTGCCACTTCTGTTCGAAATCCTTTACTCGCAAAGAGCATCTGACCAACCATGTGCGCATCCACACAGGTGAGTCGCCGCACCGCTGTGAGTTCTGCAACAAGACGTTCACACGCAAGGAACATCTGACCAACCACTTGCGCCAGCACACAGGAGAGACACCTCATTGCTGCCATGTCTGCTCCAAACCCTTCACACGCAAAGAGCACCTTGTCAACCACATGCGTTGTCACACGGGTGAGCGCCCCTTCGCTTGCCAGGAATGTGGCAAGGCATTCCCACTCAAGGGAAACTTGCTCTTCCATCAGCGCTCCCACAACAAGGGTGCCGCTGCTGAGCGACCTTTTCGCTGTGACCTTTGTCCCAAGGACTTCATGTGTAAGGGCCACCTAGTTTCTCATCGACGAAGTCACTCCGGAGACCGGCCCCATGCCTGTCCAGACTGTGGCAAAACATTTGTGGAGAAGGGCAACATGCTACGGCACCTTCGCAAGCACTCTGCAGATGGCCAGAGCCTTCATAACCCACCAGGAGGTGTGGTGGTGCCACCCTCACATCACCTGCAGCAGCACCATCCCGTGCCCCCACATGGACCTGTGGTTGTTCCCACGCCTAACGCTGCTGTGCTTTCTACCTACTGA
Protein Sequence
MLKTVLIEALYQIAQLAQQQQQQPHQHQQQPHQHQQGQTEANRELQQSQEVGTQMDSAGASEVKDEKTSSSGPCAKELRSLPCTAGFPVQDMKGHMMDIRTPDGSIVKISAPGNGDQELSKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMAAAGVPAQTTPTTSSTSGTGVNKSCTGEPCSTNSSVTTLPTAVITTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCSVCFHVFANAASLERHMKRHATDKPYACSVCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCHVCSKPFTRKEHLVNHMRCHTGERPFACQECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHSADGQSLHNPPGGVVVPPSHHLQQHHPVPPHGPVVVPTPNAAVLSTY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446810;
90% Identity
iTF_01446810;
80% Identity
iTF_01450793;