Tpod019713.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- ttk
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000005.1:44431743-44451328[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00038 0.12 13.9 0.1 1 36 162 197 162 204 0.87 2 4 6.7e-10 2.2e-07 32.3 0.0 3 39 214 249 212 253 0.92 3 4 0.92 3e+02 3.0 0.0 24 39 291 306 275 312 0.80 4 4 5.6e-10 1.8e-07 32.5 0.0 5 37 333 365 331 371 0.89
Sequence Information
- Coding Sequence
- ATGGCCGATGTCACACTTAGCGCGCAGGGGAAGAGGATACACGCACACAGAATTGTGCTGTCTGTCTGCAGTCCATTATTCCAGGAGCTATTGTCCAACTGCCAAGACCCACATCCTGTCATCATCTTTAGTGAGATGAATTTCAATGACATCTGTTCCATTGTCGAGTTTGTGTACAGAGGAGAGCTGAGCATTGGAGGGGATCGCATGACCTCTGTTCTGAAGGTCGCAGAGGAACTCAAGATTAGAGGACTGATGTGGGTGCTGGAGGAAGTGGAGTTGACCCCCGAGGGGAACTTAGTGGACCACAACACATGTGCGGAGGAGCACCTACATGAGCAAATGGGAGCACAGACAGCGAATGGCGAAGGGAAGACAACTCAAACTGCCGGAACTAAACGTTTGGCCAAAAAGGGTGGAGGCAAAGTTCTAGATGAAGATAGGAAGAGAAGACGAAGGAGAGACTCTATCAAAAAGGAGTAcagTGAGGAGAGCATTGCGCAGGCCTTGGAGGATCTCAAGTCTGGCCGCACGCTCGTGGAGACAGCCATCGCGCACAATGTCCCCCGCTCCACGCTTTATGTGCGGGCACGCACACAGCACGTGTCACTGGCCTATACGAGACAGGAGCACTCTGGAGAGATCATAAAGGCGGCCGTGCAGGCCGTTGTAGATGGTGCGAGTCTACAGAAAGCGTCAGAGAAGCACAAGATTCCCAAAACAGTACTGTGGCGGCGTGTACAGAAGGAGCTGGGTAGGTACGGTATCTCCCACCGGCGTGGTGCCGGTACCAGGACGCCGTCCAGGTCTGAGAAGAGGCTAGCTGCTATCCAGGCGCTCGAGCAGGGTGACACACTCACCACAGTCTCCAAACAGTTCCAGATCCCCAAGACGACCTTGTTTCGTGAAAAGACTCGGCTGGTGGAAGCGGGCAGACTCCCCTGGTCCTGTCTGCGGAAGAGAGACCCAGAGTACGACGGGAAGCACCAGCGGAGACTAAAGGACGCAGTGACTGCATGCATGGAGGGCAAGATGTCCCAGGCTACAGCCTCTATGACTTACCAGGTCCCGAAGACGACGATATGGCGACGCCTGCACAAGGGTTCTGTCAAAGGGTCCCAGGAGTCTCGAGAGGGAGAGGAAGTGGATGACCCCGAGTCCAAGCCAGCTGAGGGCGACGAGATGGAGGATCAGCCCGAGTACACTCTCGATGTCAGTCTCTGTCACTAA
- Protein Sequence
- MADVTLSAQGKRIHAHRIVLSVCSPLFQELLSNCQDPHPVIIFSEMNFNDICSIVEFVYRGELSIGGDRMTSVLKVAEELKIRGLMWVLEEVELTPEGNLVDHNTCAEEHLHEQMGAQTANGEGKTTQTAGTKRLAKKGGGKVLDEDRKRRRRRDSIKKEYSEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIQALEQGDTLTTVSKQFQIPKTTLFREKTRLVEAGRLPWSCLRKRDPEYDGKHQRRLKDAVTACMEGKMSQATASMTYQVPKTTIWRRLHKGSVKGSQESREGEEVDDPESKPAEGDEMEDQPEYTLDVSLCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445568;
- 90% Identity
- iTF_01449734; iTF_01450389; iTF_01446404; iTF_01446728; iTF_01450715; iTF_01447413; iTF_01447695;
- 80% Identity
- iTF_01449734;