Tshe017224.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- ttk
- Assembly
- GCA_902151425.1
- Location
- CABFVX010001202.1:53487-70133[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00038 0.25 13.5 0.1 1 36 195 230 195 237 0.87 2 4 6.5e-10 4.3e-07 32.0 0.0 3 39 247 282 245 287 0.92 3 4 0.9 5.9e+02 2.7 0.0 24 39 324 339 308 345 0.80 4 4 5.5e-10 3.7e-07 32.2 0.0 5 37 366 398 364 404 0.89
Sequence Information
- Coding Sequence
- ATGGGGGATAAATCACAGAAGTTCTGTCTCAAGTGGACCAACTACCAGCATCACCTCTCTGAGAGCTTCCTCTCACTCTTACAGACTGAATCTATGGCCGATGTCACGCTTAGCGCACAGGGGAAGAGGATACATGCGCACAGAATTGTACTGTCTGTATGCAGTCCATTATTCCAGGAGCTCTTGTCCAACTGCCAGGACCCACATCCCGTCATCATCTTCAGCGAGATGAATTTCAATGACATCTGTTCCATTGTCGAGTTCGTGTACAGAGGAGAGCTGAGCATTGGAGGGGATCGCATGACTTCTGTTCTGAAGGTCGCAGAGGAACTCAAAATTAGAGGACTGATGTGGGTGCTGGAGGAAGTGGAGTTAACCCCCGAGGGGAACTTGGTGGACCACAACACATGCGCGGAGGAACACCTACATGAGCAAATGGGGTCACCGACGTCGAATGGCGCCACTCAAGGGAAGACAACTCGAACTGCTGGAACTAAACGCTTGGCCAAAAAGGGTGGAGGCAAAGTTTTAGATGAAGATAGGAAGAGAAGACGAAGGAGGGACTCTATCAAAAAGGAGTacagTGAAGAGAGCATCGCGCAGGCCTTGGAGGACCTCAAGTCTGGCCGCACGCTCGTGGAAACAGCCATCGCGCACAATGTCCCCCGCTCCACGCTTTATGTGCGGGCACGCACACAGCACGTGTCACTGGCCTACACGAGACAGGAGCACTCAGGAGAGATCATAAAGGCGGCTGTGCAGGCCGTTGTAGACGGCGCGAGCCTACAGAAAGCGTCGGAGAAGCACAAGATTCCCAAGACAGTACTGTGGCGCCGTGTACAGAAGGAACTGGGTAGGTACGGTATCTCTCACCGACGTGGCGCCGGTACCAGGACGCCATCCAGGTCTGAGAAGAGGCTAGCTGCTATCCAGGCGCTCGAGCAGGGTGACACACTCACCACGGTCTCCAAGCAGTTCCAGATCCCTAAGACAACCTTGTTTCGTGAAAAGACTCGGCTGGTGGAGGCGGGCAGACTCCCCTGGTCCTGTCTGCGGAAGAGAGACCCGGAGTATGACGGGAAGCACCAGCGGAGACTAAAGGACGCAGTGACCGCATGCATGGAGGGCAAGATGTCCCAGGCTACTGCCTCTATGACTTACCAGGTTCCGAAGACGACGATATGGCGACGCCTGCACAAGGGTTCCGTCAAAGGGTCCCAGGAGTGTCCAGAGGGAGAGGAAGTGGATGACCCCGAGTCCAAGCCAGCCGAGGACGACGAGACGGAGGATAAGCACGAGTACACTCTCGATTTGACGAACCAGGTCTTGGAGGGTGACGAGTTTGGCGAGACTTCCCTCATAATTCTTTCCACAAGGGGCAGTGGAGAAGAAATTGACCTGCAGGAAGGGAGTACTATCATAGAGTCCCAGGAAGAGACAACAAGCCCTGTTGACAACCAGACAGACACTCCTGAAGAGTCGCGAGAAGAAACAATCACGTGA
- Protein Sequence
- MGDKSQKFCLKWTNYQHHLSESFLSLLQTESMADVTLSAQGKRIHAHRIVLSVCSPLFQELLSNCQDPHPVIIFSEMNFNDICSIVEFVYRGELSIGGDRMTSVLKVAEELKIRGLMWVLEEVELTPEGNLVDHNTCAEEHLHEQMGSPTSNGATQGKTTRTAGTKRLAKKGGGKVLDEDRKRRRRRDSIKKEYSEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIQALEQGDTLTTVSKQFQIPKTTLFREKTRLVEAGRLPWSCLRKRDPEYDGKHQRRLKDAVTACMEGKMSQATASMTYQVPKTTIWRRLHKGSVKGSQECPEGEEVDDPESKPAEDDETEDKHEYTLDLTNQVLEGDEFGETSLIILSTRGSGEEIDLQEGSTIIESQEETTSPVDNQTDTPEESREETIT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448371;
- 90% Identity
- iTF_01449389;
- 80% Identity
- iTF_01450715;