Tcri006090.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- ttk
- Assembly
- GCA_002928295.1
- Location
- CM009474.1:10234461-10247221[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-05 0.091 13.9 0.1 1 36 200 235 200 242 0.87 2 3 1.2e-10 1.6e-07 32.4 0.0 3 39 252 287 250 291 0.92 3 3 0.0053 6.9 7.9 0.0 23 37 328 342 312 348 0.80
Sequence Information
- Coding Sequence
- ATGGGGGATAAATCTCAGAAATTCTGTCTCAAGTGGACCAACTACCAGCATCACCTCTCCGAGAGCTTCATCTCACTCTTACAGACCGAATCTATGGCCGATGTCACGCTTAGCGCGCAGGGGAAGAGGATACATGCACACAGAATTGTACTGTCTGTATGCAGTCCATTATTCCAGGAGCTTTTGTCCAACTGCCAGGATCCACATCCCATCATCATCTTCAGCGAGATGAATTTCAATGACATTTGTTCCATTGTCGAGTTTGTGTACAGAGGAGAGCTGAGCATTGGAGGGGATCGCATGACTTCTGTTCTGAAGGTTGCAGAGGAACTCAAAATTAGAGGACTGATGTGGACTGCTGTCCCCAAGGTGCTGGAGGAAGTGGAATTGACCCCCGAGGGGAACTTGGTGGACCACAACACATGCGCGGAGGAGCACCTACATGAGCAAATGGGGGCACCGACAGCGAATGGCGCCATTCAAGGGAAGACAACTCGAACTGCTGGAACTAAACGCTTGGCCAAAAAGGGTGGAGGCAAAGTTTTAGATGAAGATAGGAAGAGAAGACGAAGGAGAGACTCTATCAAAAAGGAGTAcagTGAGGAGAGCATTGCGCAGGCCTTGGAGGACCTCAAGTCTGGCCGTACGCTCGTGGAGACAGCCATTGCGCACAATGTCCCCCGCTCCACACTTTATGTACGGGCACGCACACAGCACGTGTCACTGGCCTACACGAGACAGGAGCACTCAGGAGAGATCATAAAGGCGGCTGTGCAGGCTGTTGTAGACGGTGCGAGCCTACAGAAAGCATCGGAGAAGCACAAGATTCCCAAGACAGTATTGTGGCGCCGTGTACAGAAGGAACTGGGTAGGTACGGTATCTCCCACCGGCGTGGTGCCGGTACCAGGACGCCATCCAGGTCTGAGAAGAGGCTAGCTGCTATCGAGGCGCTCGAGCAGGGTGACACACTCACCACAGTCTCCAAGCAGTTCCAGGTTCCGAAGACAACGATATGGCGACGCCTGCACAAGGGTTCTGTCAAAGGGTCCCAGGAGTCTCCAGAGGGAGAGGAAGTGGATGATCCCGAGTCCAAGCCAGCCGAGGACGACGAGACGGAGGATAAGCCCGAGTACACTCTCGATGTCAGTTTCCGTCGCCGGACCTTGTCATCTTCATAG
- Protein Sequence
- MGDKSQKFCLKWTNYQHHLSESFISLLQTESMADVTLSAQGKRIHAHRIVLSVCSPLFQELLSNCQDPHPIIIFSEMNFNDICSIVEFVYRGELSIGGDRMTSVLKVAEELKIRGLMWTAVPKVLEEVELTPEGNLVDHNTCAEEHLHEQMGAPTANGAIQGKTTRTAGTKRLAKKGGGKVLDEDRKRRRRRDSIKKEYSEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIEALEQGDTLTTVSKQFQVPKTTIWRRLHKGSVKGSQESPEGEEVDDPESKPAEDDETEDKPEYTLDVSFRRRTLSSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445787; iTF_01449389; iTF_01449734;
- 90% Identity
- iTF_01445787;
- 80% Identity
- iTF_01445787;