Tdou033187.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- ttk
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010004091.1:6259-26343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00033 0.2 13.7 0.1 1 36 195 230 195 237 0.87 2 4 5.6e-10 3.4e-07 32.2 0.0 3 39 247 282 245 287 0.92 3 4 0.78 4.7e+02 2.9 0.0 24 39 324 339 308 345 0.80 4 4 4.8e-10 2.9e-07 32.4 0.0 5 37 366 398 364 404 0.89
Sequence Information
- Coding Sequence
- ATGGGGGATAAATCTCAGAAGTTCTGTCTCAAGTGGACCAACTACCAGCATCACCTCTCTGAGAGCTTCATCTCACTCTTACAGACTGAATCTATGGCCGATGTCACGCTTAGCGCGCAGGGGAAGAGAATACATGCACACAGAATTGTACTGTCTGTATGCAGTCCATTATTCCAGGAGCTCTTGTCCAACTGCCAAGACCCACATCCCGTCATCATCTTCAGCGAGATGAATTTCAATGACATCTGTTCCATTGTCGAGTTCGTGTACAGAGGAGAGCTGAGCATTGGAGGGGATCGCATGACTTCTGTTCTGAAGGTCGCAGAGGAACTCAAAATTAGAGGACTGATGTGGGTGCTGGAGGAAGTGGAGTTGACCCCCGAGGGGAACTTGGTGGACCACAACACATGCGCGGAGGAGCACCTACATGAGCAAATGGGGGCACCGACGTCGAATGGCGCCACTCAAGGGAAGACAACTCGAACTGCTGGAACTAAACGCTTGGCCAAAAAGGGCGGAGGCAAAGTTTTAGATGAAGATAGGAAGAGAAGACGAAGGAGGGACTCTATCAAAAAGGAGTacagTGAAGAGAGCATTGCGCAGGCCTTGGAGGACCTCAAGTCTGGCCGCACGCTCGTGGAGACGGCCATCGCGCACAATGTCCCCCGCTCCACGCTTTATGTGCGGGCACGCACACAGCATGTGTCACTGGCCTACACGAGACAGGAGCACTCAGGAGAGATCATAAAGGCGGCTGTGCAGGCCGTTGTAGACGGTGCGAGCCTACAGAAAGCGTCGGAGAAGCACAAGATTCCCAAGACAGTACTGTGGCGCCGTGTACAGAAGGAACTGGGTAGGTACGGTATCTCCCACCGACGTGGTGCCGGTACCAGGACGCCATCCAGGTCTGAGAAGAGGCTAGCTGCTATCCAGGCGCTCGAGCAGGGTGACACACTCACCACGGTCTCCAAGCAGTTCCAGATCCCCAAGACGACCTTGTTTCGTGAAAAGACTCGGCTGGTGGAGGCGGGCAGACTCCCCTGGTCCTGTCTGCGGAAGAGAGACTCTGAGTACGACGGGAAGCACCAGCGGAGACTAAAGGACGCAGTGACCGCATGCATGGAGGGCAAGATGTCCCAGGCTACTGCCTCTATGACTTACCAGGTTCCGAAGACGACGATATGGCGACGCCTGCACAAGGGTTCTGTCAAAGGGTCCCAGGAGTCTCCAGAGGGAGAGGAAGTGGATGACCCCGAGTCCAAGCCAGCCGAGGACGACGAGACGGAGGATAAGCCCGAGTACACTCTTGATGTCAGTTTCCGTCGCCAGACCTTGTCATCTTCATAG
- Protein Sequence
- MGDKSQKFCLKWTNYQHHLSESFISLLQTESMADVTLSAQGKRIHAHRIVLSVCSPLFQELLSNCQDPHPVIIFSEMNFNDICSIVEFVYRGELSIGGDRMTSVLKVAEELKIRGLMWVLEEVELTPEGNLVDHNTCAEEHLHEQMGAPTSNGATQGKTTRTAGTKRLAKKGGGKVLDEDRKRRRRRDSIKKEYSEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIQALEQGDTLTTVSKQFQIPKTTLFREKTRLVEAGRLPWSCLRKRDSEYDGKHQRRLKDAVTACMEGKMSQATASMTYQVPKTTIWRRLHKGSVKGSQESPEGEEVDDPESKPAEDDETEDKPEYTLDVSFRRQTLSSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448371;
- 90% Identity
- iTF_01449389;
- 80% Identity
- iTF_01446728;