Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000674.1:93921-108957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00019 0.04 16.5 1.6 1 23 608 630 608 630 0.96

2 17 0.027 5.5 9.7 0.9 2 19 647 664 646 666 0.93

3 17 0.43 89 5.9 0.3 1 10 675 684 675 697 0.88

4 17 0.014 2.8 10.6 3.7 3 23 705 726 704 726 0.95

5 17 0.00055 0.11 15.0 9.6 1 23 732 754 732 754 0.98

6 17 0.0046 0.96 12.1 3.7 1 23 760 782 760 782 0.98

7 17 0.014 2.9 10.6 2.6 1 21 788 808 788 809 0.95

8 17 0.034 6.9 9.4 0.3 6 23 810 827 808 827 0.96

9 17 1.3 2.7e+02 4.4 0.3 1 23 844 867 844 867 0.92

10 17 0.067 14 8.5 0.4 1 23 873 895 873 895 0.98

11 17 0.024 5 9.8 0.4 2 23 919 940 918 940 0.96

12 17 0.3 61 6.4 4.8 1 23 946 968 946 968 0.99

13 17 1.8e-06 0.00036 22.9 0.8 1 23 974 996 974 996 0.95

14 17 0.041 8.4 9.1 1.2 1 23 1002 1024 1002 1024 0.97

15 17 0.032 6.6 9.5 2.2 1 23 1030 1052 1030 1052 0.96

16 17 1.4e-06 0.00029 23.2 1.2 1 23 1058 1080 1058 1080 0.98

17 17 0.00014 0.029 16.9 0.5 3 23 1088 1108 1087 1108 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00019	0.04	16.5	1.6	1	23	608	630	608	630	0.96
2	17	0.027	5.5	9.7	0.9	2	19	647	664	646	666	0.93
3	17	0.43	89	5.9	0.3	1	10	675	684	675	697	0.88
4	17	0.014	2.8	10.6	3.7	3	23	705	726	704	726	0.95
5	17	0.00055	0.11	15.0	9.6	1	23	732	754	732	754	0.98
6	17	0.0046	0.96	12.1	3.7	1	23	760	782	760	782	0.98
7	17	0.014	2.9	10.6	2.6	1	21	788	808	788	809	0.95
8	17	0.034	6.9	9.4	0.3	6	23	810	827	808	827	0.96
9	17	1.3	2.7e+02	4.4	0.3	1	23	844	867	844	867	0.92
10	17	0.067	14	8.5	0.4	1	23	873	895	873	895	0.98
11	17	0.024	5	9.8	0.4	2	23	919	940	918	940	0.96
12	17	0.3	61	6.4	4.8	1	23	946	968	946	968	0.99
13	17	1.8e-06	0.00036	22.9	0.8	1	23	974	996	974	996	0.95
14	17	0.041	8.4	9.1	1.2	1	23	1002	1024	1002	1024	0.97
15	17	0.032	6.6	9.5	2.2	1	23	1030	1052	1030	1052	0.96
16	17	1.4e-06	0.00029	23.2	1.2	1	23	1058	1080	1058	1080	0.98
17	17	0.00014	0.029	16.9	0.5	3	23	1088	1108	1087	1108	0.95

Sequence Information

Coding Sequence: ATGGATGAATCAGTTGACACTGTCAAGATGGTGTTGAAAAGTGACACCGGGGACTCTGTAACTGTCTGTATGTACCCAGACAACGCTTTTGAAGAGTTCAGCAACAAGTTCCATAACCAACTTGACCTACCGTTGGATTGCCAGTTGAAAGTGGAGGACAACCATTTCTTGACAAAAGAAAAAGATTCAGAACTGTTGTTTGGTGATCTTAGCCCAAGTCTTGGGTTGATTTCCTCCGTGAGTGATGTCACCGATGTTACATTTGTGAGCACAGATCCTGAGACACACTCTATCACAAGTGATAACAACTTTGTCATGTCACCAGTCCAACAGTTGGTGTACCCCCAGAATGTGAGGAACTGCATGAAGCCAGAGGTGTCTTATGACTCGTGTTCACCTGCATGGAGCAAAGTGGTCTCGTTTAGATGTGCGGTCCCAACATGTGTCAATACCAAGGACACCTGGCCCAGGAAGAAGTTCTTTAAGTTCCCCATTGCCAAAGATAGGTGTCATCAGTGGCTGCAGCTTTGCAGGCGGGAGGACCTTCTCGAGGAGCCCAGTGAAATGGTTGGCAGCCTCTATGTTGTGTGTTCAGATCACTTCATTCAAGACCACTTTGTGACGGTGGCTCGTAAAGCTCTGACCAAAATGGCAGTGCCGACAATCTTTCCTGCTTCTGACGATACACTGGCAAAACAGTCTGTAAATACCAAAGGTTTAGAAAATGAAAGTATACACACTGATGAGAGAGAAGAAGATGACATCGTTGATGATgatgttttttatgtttgtgaCAGTGATACTGAAGATTTAGGAGAGTTAACGGGACTGCAGAAATCATATTTGGAAAGGGGCAGCAGCAGTTCCGACTCTGAGAGGGATGTAGACTCCCCTGGTCAATTGTGCAGACTTTGTGGATGTGTTTCTGAGGATGCAGCATACATCTACGGCAGCACCGAGGAGGATTTGGGTCTCGCGACCAAGATCAACACCTTGCTGCCAATCATTGTTGAGAAGAGTGACCCACTTCCCAAGCAGGTGTGTATGGACTGCCTCTCTAAATTGGACACCTGCTTTGAGCTAACTAAATCATGTCTCAGGACAGACCGATGGTTGAATCGTTTGAAGAGGAAGAAACTATTCAGGAGTCATACTTTAATGAAAGTTCATCCTGAAGAAGTTTCTCAGAAAAGTAGCAATGGTTTCATAAAACTAGAAGTAACTAATTCCACATCTTTTTGTGAGCAGACAAAAGATGATAGCTCTACAAACAATTCTACTGATgtcaaaaaaaagtatgatgAAAACAGCTTTAACAATAGCGCCACTGAAAAGTTGGTTACAAGTTGCTATACTTGTCCGTTTTGCTCATATGGTACCATGATCATGCAAAAAACCTCATCTCATGATTCAACTTTAGTATGTGGAGACACAAAAACAACAGAGCAAAGTATTAACTCTACTGACTTACCAAATGATAAATCCGCAAAACAAATGTTGAACAAAGACTCTCTTTCCACAAGTGATACAGAAATACATCCTGAGCTACCGAATTTATTTTACGAAGTCAGAGATGAGCATGGGAATAAATATGCAATGGTTGAGCCGACACCCAGTTGGTGGAATGAGGATGGTAACATGGGAAACACGGAGATAATAATCCATGCTGTGAACCCAAATAAATTGAGTGAAGAACCATGGTCGACTTTGAATCATGCTGATGAAAGTGTTGACCGCCATTGCTGCCTCCTCTGTGGCAATAGTTTCCAGACTCTCGAAATGTGTCTGGAGCACAGCAACTCCCACCTAGACACTGAAGGTTTTGTCTGTAACATGTGTCTCCTTCACTTTTCAAACAAATCTGAACTCACCAGTCACATGGATGATCATCGAGCAGACGAGAAACGACTCTTGAGAGTGGAAGGTTCTAAACGCCTCATTTGCACTGTCTGTGGCAGGAAGTTTAATAATGAGAGGACATGGAAGGCCCACTCTTGTGCCAGTGAACCTTCAAAAAAACAGTTCAAGTGCGCAGAGTGTAACAAATCTTTCCTTACTGAGGAACGCCTTACATTCCATGGGATTTTGCACAAACTCAAGCAGCCTAACCACTGTGAGAAGTGTGACAGGCAATTTGAGCACAGGAGTGCTTTCTACCAACACTGGCGGCTTGTCCATGAAGGTGAACGACCGTTTTGCTGCCACAAATGTGGAAAAACATTCTACTCTCACTCAAGACTTGTCACACACCTACGCACCCACTCAGGTGAACGGCCTTATGAGTGTGATGTTTGTCACCATAAGTTTTATGATAATGAGACACTCAAAGGTCACTATGTCACACACATGAACACAAAGCCATTTCAGTGCCATCTCTGTGGGGCTTTTTGTGGCCGTCGAAGTTTATTCAATCAGCATTTGAAATCATGCAACAAGACATTCACGAGTTCCAATGAAGTGTTGACTCACAGAGCTACCCACTGGCACCGAGAAGAAAAAGACAAAAATCGTGAAGATAATCCTGTGACCCATGATTGTGAATACTGTGGGAATGGTTACTTGTCCATAGCCGAACTGGCAAAACATCGAAAACTAGAGCATGCAGAAGAAAAGCCGTACGTTTGTAGCATCTGTAGTGAGTTGACCAAGACACTTTACGAAGCAAGGGCGCACAGGAAAAGTCACACAACAGTGTCGAGTGTTTCAGAGGAATCTGGTGGGAACATGAAGGAAGGGGACAAGTACGCATCATTAGTTTGTGAAGAGTGTGGGGCCCAGTGTGAAGGAAGTAGGAAGCTGAAGGCACATTTGAAGCTACACAGGGCGGAGACAGTCTACCAGTGCGGAATGTGCTGCCGGAACTTCCCCAACCACCGGCGGTTGATTCTGCACCAACGCATGCACTCCGGAGAGAAACCTTACCCTTGTCCAGATTGTGGTAAGAGGTTCTCTCAATCGTCAGCACTGCACACACATTCGTTACTTCACACAGGAGAAAAACCTCACATATGTGACCTGTGTGACGCTACCTTCAGGATCAAGGCGGACAGAGACAACCATCGGCGCACACATACCGGAGAGCGGCCTTACCGTTGCGAGTACTGCTCCAAACAGTTCCGGACCGGCCAGGTGTATTACCAACACCGCATGATCCACACAGGGGAGCGGCGTTTCCCTTGCAATGTTTGTGGCAAGGCGTTCAAACGCTCCCACACACTCGTGGTCCACAAGCGTATCCATACAGGAGAAAAGCCCAATATCTGCGATGTCTGCGGCAAAGGTTTCCGCCAACGAACGGATATGAGGAAACACAGGGCTCTCCATGGCTCGTGA
Protein Sequence: MDESVDTVKMVLKSDTGDSVTVCMYPDNAFEEFSNKFHNQLDLPLDCQLKVEDNHFLTKEKDSELLFGDLSPSLGLISSVSDVTDVTFVSTDPETHSITSDNNFVMSPVQQLVYPQNVRNCMKPEVSYDSCSPAWSKVVSFRCAVPTCVNTKDTWPRKKFFKFPIAKDRCHQWLQLCRREDLLEEPSEMVGSLYVVCSDHFIQDHFVTVARKALTKMAVPTIFPASDDTLAKQSVNTKGLENESIHTDEREEDDIVDDDVFYVCDSDTEDLGELTGLQKSYLERGSSSSDSERDVDSPGQLCRLCGCVSEDAAYIYGSTEEDLGLATKINTLLPIIVEKSDPLPKQVCMDCLSKLDTCFELTKSCLRTDRWLNRLKRKKLFRSHTLMKVHPEEVSQKSSNGFIKLEVTNSTSFCEQTKDDSSTNNSTDVKKKYDENSFNNSATEKLVTSCYTCPFCSYGTMIMQKTSSHDSTLVCGDTKTTEQSINSTDLPNDKSAKQMLNKDSLSTSDTEIHPELPNLFYEVRDEHGNKYAMVEPTPSWWNEDGNMGNTEIIIHAVNPNKLSEEPWSTLNHADESVDRHCCLLCGNSFQTLEMCLEHSNSHLDTEGFVCNMCLLHFSNKSELTSHMDDHRADEKRLLRVEGSKRLICTVCGRKFNNERTWKAHSCASEPSKKQFKCAECNKSFLTEERLTFHGILHKLKQPNHCEKCDRQFEHRSAFYQHWRLVHEGERPFCCHKCGKTFYSHSRLVTHLRTHSGERPYECDVCHHKFYDNETLKGHYVTHMNTKPFQCHLCGAFCGRRSLFNQHLKSCNKTFTSSNEVLTHRATHWHREEKDKNREDNPVTHDCEYCGNGYLSIAELAKHRKLEHAEEKPYVCSICSELTKTLYEARAHRKSHTTVSSVSEESGGNMKEGDKYASLVCEECGAQCEGSRKLKAHLKLHRAETVYQCGMCCRNFPNHRRLILHQRMHSGEKPYPCPDCGKRFSQSSALHTHSLLHTGEKPHICDLCDATFRIKADRDNHRRTHTGERPYRCEYCSKQFRTGQVYYQHRMIHTGERRFPCNVCGKAFKRSHTLVVHKRIHTGEKPNICDVCGKGFRQRTDMRKHRALHGS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448624; iTF_01445094; iTF_01444834; iTF_01446924; iTF_01446661; iTF_01450647; iTF_01450891;
90% Identity: iTF_01450647;
80% Identity: iTF_01448624;