Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010000143.1:335862-352843[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00013 0.036 16.9 1.6 1 23 597 619 597 619 0.96

2 17 0.025 6.9 9.7 0.9 2 19 636 653 635 655 0.93

3 17 0.12 33 7.6 0.4 1 10 664 673 664 686 0.88

4 17 0.013 3.6 10.6 3.7 3 23 694 715 693 715 0.95

5 17 0.00052 0.14 15.0 9.6 1 23 721 743 721 743 0.98

6 17 0.0045 1.2 12.1 3.7 1 23 749 771 749 771 0.98

7 17 0.01 2.9 10.9 6.5 1 23 777 799 777 800 0.96

8 17 0.00095 0.26 14.2 2.1 1 23 815 837 815 837 0.97

9 17 1.3 3.4e+02 4.4 0.3 1 23 854 877 854 877 0.92

10 17 0.0029 0.8 12.7 0.5 1 23 883 905 883 905 0.98

11 17 0.023 6.3 9.8 0.4 2 23 929 950 928 950 0.96

12 17 0.29 78 6.4 4.8 1 23 956 978 956 978 0.99

13 17 1.7e-06 0.00046 22.9 0.8 1 23 984 1006 984 1006 0.95

14 17 0.039 11 9.1 1.2 1 23 1012 1034 1012 1034 0.97

15 17 0.031 8.4 9.5 2.2 1 23 1040 1062 1040 1062 0.96

16 17 1.4e-06 0.00037 23.2 1.2 1 23 1068 1090 1068 1090 0.98

17 17 0.00014 0.037 16.9 0.5 3 23 1098 1118 1097 1118 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00013	0.036	16.9	1.6	1	23	597	619	597	619	0.96
2	17	0.025	6.9	9.7	0.9	2	19	636	653	635	655	0.93
3	17	0.12	33	7.6	0.4	1	10	664	673	664	686	0.88
4	17	0.013	3.6	10.6	3.7	3	23	694	715	693	715	0.95
5	17	0.00052	0.14	15.0	9.6	1	23	721	743	721	743	0.98
6	17	0.0045	1.2	12.1	3.7	1	23	749	771	749	771	0.98
7	17	0.01	2.9	10.9	6.5	1	23	777	799	777	800	0.96
8	17	0.00095	0.26	14.2	2.1	1	23	815	837	815	837	0.97
9	17	1.3	3.4e+02	4.4	0.3	1	23	854	877	854	877	0.92
10	17	0.0029	0.8	12.7	0.5	1	23	883	905	883	905	0.98
11	17	0.023	6.3	9.8	0.4	2	23	929	950	928	950	0.96
12	17	0.29	78	6.4	4.8	1	23	956	978	956	978	0.99
13	17	1.7e-06	0.00046	22.9	0.8	1	23	984	1006	984	1006	0.95
14	17	0.039	11	9.1	1.2	1	23	1012	1034	1012	1034	0.97
15	17	0.031	8.4	9.5	2.2	1	23	1040	1062	1040	1062	0.96
16	17	1.4e-06	0.00037	23.2	1.2	1	23	1068	1090	1068	1090	0.98
17	17	0.00014	0.037	16.9	0.5	3	23	1098	1118	1097	1118	0.95

Sequence Information

Coding Sequence: ATGGATGAATCGGCCGACACCGTCAAGATGGTGTTGAAAAGTGACACCGGGGACTCTGTAACTGTCTGTATGTACCCAGACAACGCTTTCGAAGCGTTCAGCAACAAGTTCCATAACCATCTTGACCTACCGTTGGATTGCCCGTTGAAAGTCGAGGACAGCCATTTCTTGACAAAAGAAAAAGATTCAGAACTGTTGTTTGGTGATCTTAGCCCAAGTCTTGGGTTGATTTCCTCCGTGAGTGATGTCACCGATGTTACATTTGTGAGCACAGATCCTGAGACACACTCTATCACAAGTGATAACAACTTTGTCATGTCACCAGTCCAGCAGTTGGTGTACCCCCAAGATGTGAGGAGCTGCATGAAGCCAGAGGTGTCTTATGACTCGTGTTCACCTGAATGGAGCAAAGTGATCTCGTTTAGATGTGCGGTTCCAACATGTGTCAATACCAAGGACACCTGGCCCAGGAAGAAGTTCTTCAAGTTCCCCATCGCCAAAGATAGGTGTCATCAGTGGCTGCAGCTTTGCAGGCGGGAAGACCTTCTCGAGGAGCCCAGTGAAATGGTTGGCAGCCTCTATGTTGTGTGTTCAGATCACTTCATTCAAGACCACTTTGTGACGGTGGCTCGTAAAGCTCTGACCAAAATGGCAGTGCCAACAATATTTCCTGCTTCTGACAATATACTGGCAAAACAGTCTGTAAATACCAAAGGTTCAGAAAATGAAAGTATACACTCTGAGGAGAGAGAAGAAGATGACATCGTTGATGATgatgttttttatgtttgtgaTAGTGATACTGGAGATTTAGGAGAGTTAACAGGACTGGAGAGGAGCAGCAGCAGTTCCGACTCTGAGACGGATCTAGACTCCCTCAGTCAATTGTGCAGACTTTGTGGGTGTGTTTCTGAGGATGCAGCATACATCTACGGCAGCACCGAGGAGGATTTGGGGCTCGCGACCAAGATCAACACCTTGCTGCCAATCATTGTTGAGAAGAGTGATCCACTTCCCAAGCAGGTGTGTATGGACTGCCTCTCTAAATTGGACACCTGCTTCGAGCTAACTAAATCATGTCTCAGGACAGACCGATGGTTGAATCGTTTGAGGAGGAAGAAACTCTTCAGgAGTCATACTTTAATGAAAGTTCATCCTGGAGAAGTTTCTCAGAAAAGTAACAATGGTTTCATAAAACTAGAAGTAACTAATTCCACATCTCTTTGTGAGCAGACAAACAATTCTACTGATgtcaaaaaaaagtatgatgAAGATGACTTTAACAATAGCGCCATTGAAAAGTTGGTTACAAGTTGTTATTCTTGTCCGTTTTGCTCATATGGTACCATGATCATGCAAAAAACTTCATCTCATGATTCAACTTTAGTATGCGGAGACATAAAAACAACAGAGCAAAGTATTAACTCTAGTGACTTACCAAATGATAAATCCGCAAAACAAATGTTGAACAAAGACTCTGTTTCCACAAGTAATACAGAAATACATCCTGAGCTAccgaatttattttatgaagtcAGAGATGAGCATGGGAATAAATATGCAATGGTTGAGCCGACACCAAGTTGGTGGAATGAGGATGGTAACATGGGAAACACGGAGATAATAATCCATGCAGTGAACCCAAATAAATTGAGTGAAGAACCATGGTCGACTTTGAATCATGCAGATGAAAGTGTTGACCGCCATTGCTGCCTCCTCTGTGGCAATAGTTTCCAGACTCTCGAATTGTGCCTGGAGCACAGCAACTCCCACCTAGACACTGAAGGTTTTGTCTGTAACATGTGTCTCCTTCACTTTTCAAACAAATCTGAACTCACCAATCACATGGATGATCATCGAGCAGACGAGAAACGACTCTTGAGAGTGGAAGGTTCTAAACGCCTCATTTGCACTGTCTGTGGCAGGAAGTTCAATAACGAGAGGACATGGAAGGCCCACTCTTGTGCCAGTGAACCTTCAAAAAAACTGTTCAAGTGCACAGAGTGCAACAAATCTTTCCTTACTGAGGAACGCCTTACATTCCATGGAATTTTGCACAAACTCAAGCAGCCCAACCACTGCGAGAAGTGTGACAGGCAATTTGAGCACAGGAGTGCTTTCTACCAACACTGGCGGCTTGTCCATGAAGGTGAAAGACCGTTTTGCTGCCACAAATGTGGCAAAACATTCTACTCTCACTCAAGGCTTGTCACACACCTACGCACCCACTCAGGTGAACGGCCTTATGAGTGTGATGTTTGTCACCATAAGTTTTATGACAATGAGACACTCAAAGGTCACTATGTCACACATATGAACACAAAGCCATTTCAGTGTCATCTCTGTGGGGCTTTTTGTGGCCGCCGAAGTTTATTCAATCAGCATTTGAAAGTTCACCATAGTAGTCCAAATGGCCCCAAGCGGGCCCCGTCCCTCATACATTATTTCTGTAAGTCATGCAACAAGACATTCACGAGTTCCAACGAAGTGTTGACTCACAGAGCTACCCACTGGCACCGAGAAGAAAAAGACAAAAATCGCGAAGATAATCCTGTGACCCATGATTGTGAGTACTGTGGGAATGGTTACTTGTCCATAGCCGAACTGGCAAAACATCGAAAACTAGAGCATGCGGAAGAAAAGCCATACGTTTGTAGCATTTGTAGTGAGTCGACCAAGACACTTTACGAAGCAAGGGCGCACAGGAAAAGTCACACAACAGTGTCAAGTGTTTCAGAGGAATCTGGTGGGAACATGAAGGAAGGGGACAAGTACGCATCATTAGTTTGTGAAGAGTGTGGGGCCCAGTGTGAAGGAAGTAGGAAGCTGAAGGCACATTTGAAGCTACACAGGGCGGAGACAGTCTACCAGTGCGGAATGTGTTGCCGGAACTTCCCCAACCACCGGCGGTTGATTCTGCACCAACGCATGCACTCCGGAGAGAAGCCTTACCCTTGTCCAGATTGTGGTAAGAGGTTCTCTCAATCGTCAGCACTGCACACACATTCGTTACTTCACACAGGAGAGAAACCTCACATATGTGATCTGTGTGACGCTACCTTCAGGATCAAGGCGGACAGAGACAACCACCGGCGCACGCACACCGGAGAGAGGCCTTACCGCTGCGAGTACTGCTCCAAACAGTTCCGGACCGGCCAGGTGTATTACCAGCACCGCATGATCCACACAGGGGAGCGGCGTTTCCCTTGCAATGTTTGTGGCAAGGCGTTCAAACGCTCCCACACACTCGTGGTCCACAAGCGTATCCATACAGGAGAAAAGCCCAATATCTGCGATGTCTGCGGCAAAGGTTTCCGCCAACGAACGGATATGAGGAAACACAGGGCTCTCCATGGCTCGTGA
Protein Sequence: MDESADTVKMVLKSDTGDSVTVCMYPDNAFEAFSNKFHNHLDLPLDCPLKVEDSHFLTKEKDSELLFGDLSPSLGLISSVSDVTDVTFVSTDPETHSITSDNNFVMSPVQQLVYPQDVRSCMKPEVSYDSCSPEWSKVISFRCAVPTCVNTKDTWPRKKFFKFPIAKDRCHQWLQLCRREDLLEEPSEMVGSLYVVCSDHFIQDHFVTVARKALTKMAVPTIFPASDNILAKQSVNTKGSENESIHSEEREEDDIVDDDVFYVCDSDTGDLGELTGLERSSSSSDSETDLDSLSQLCRLCGCVSEDAAYIYGSTEEDLGLATKINTLLPIIVEKSDPLPKQVCMDCLSKLDTCFELTKSCLRTDRWLNRLRRKKLFRSHTLMKVHPGEVSQKSNNGFIKLEVTNSTSLCEQTNNSTDVKKKYDEDDFNNSAIEKLVTSCYSCPFCSYGTMIMQKTSSHDSTLVCGDIKTTEQSINSSDLPNDKSAKQMLNKDSVSTSNTEIHPELPNLFYEVRDEHGNKYAMVEPTPSWWNEDGNMGNTEIIIHAVNPNKLSEEPWSTLNHADESVDRHCCLLCGNSFQTLELCLEHSNSHLDTEGFVCNMCLLHFSNKSELTNHMDDHRADEKRLLRVEGSKRLICTVCGRKFNNERTWKAHSCASEPSKKLFKCTECNKSFLTEERLTFHGILHKLKQPNHCEKCDRQFEHRSAFYQHWRLVHEGERPFCCHKCGKTFYSHSRLVTHLRTHSGERPYECDVCHHKFYDNETLKGHYVTHMNTKPFQCHLCGAFCGRRSLFNQHLKVHHSSPNGPKRAPSLIHYFCKSCNKTFTSSNEVLTHRATHWHREEKDKNREDNPVTHDCEYCGNGYLSIAELAKHRKLEHAEEKPYVCSICSESTKTLYEARAHRKSHTTVSSVSEESGGNMKEGDKYASLVCEECGAQCEGSRKLKAHLKLHRAETVYQCGMCCRNFPNHRRLILHQRMHSGEKPYPCPDCGKRFSQSSALHTHSLLHTGEKPHICDLCDATFRIKADRDNHRRTHTGERPYRCEYCSKQFRTGQVYYQHRMIHTGERRFPCNVCGKAFKRSHTLVVHKRIHTGEKPNICDVCGKGFRQRTDMRKHRALHGS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448922;
90% Identity: iTF_01450647;
80% Identity: iTF_01450647;