Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010003770.1:41123-53569[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5 1e+03 2.7 1.9 1 14 576 589 576 598 0.77

2 18 0.00026 0.058 16.0 1.5 1 23 604 626 604 626 0.96

3 18 0.02 4.6 10.1 0.9 2 20 643 661 642 663 0.91

4 18 0.13 29 7.6 0.4 1 10 672 681 672 694 0.88

5 18 0.014 3.1 10.6 3.7 3 23 702 723 701 723 0.95

6 18 0.00054 0.12 15.0 9.6 1 23 729 751 729 751 0.98

7 18 0.0042 0.95 12.2 4.2 1 23 757 779 757 779 0.98

8 18 0.011 2.4 10.9 6.5 1 23 785 807 785 808 0.96

9 18 0.00099 0.22 14.2 2.1 1 23 823 845 823 845 0.97

10 18 0.046 10 8.9 0.3 1 23 862 885 862 885 0.93

11 18 0.066 15 8.4 0.4 1 23 891 913 891 913 0.98

12 18 0.016 3.6 10.4 0.3 2 23 937 958 936 958 0.96

13 18 0.3 66 6.4 4.8 1 23 964 986 964 986 0.99

14 18 1.7e-06 0.00039 22.9 0.8 1 23 992 1014 992 1014 0.95

15 18 0.041 9.1 9.1 1.2 1 23 1020 1042 1020 1042 0.97

16 18 0.032 7.2 9.4 2.2 1 23 1048 1070 1048 1070 0.96

17 18 1.4e-06 0.00032 23.1 1.2 1 23 1076 1098 1076 1098 0.98

18 18 0.00014 0.032 16.9 0.5 3 23 1106 1126 1105 1126 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5	1e+03	2.7	1.9	1	14	576	589	576	598	0.77
2	18	0.00026	0.058	16.0	1.5	1	23	604	626	604	626	0.96
3	18	0.02	4.6	10.1	0.9	2	20	643	661	642	663	0.91
4	18	0.13	29	7.6	0.4	1	10	672	681	672	694	0.88
5	18	0.014	3.1	10.6	3.7	3	23	702	723	701	723	0.95
6	18	0.00054	0.12	15.0	9.6	1	23	729	751	729	751	0.98
7	18	0.0042	0.95	12.2	4.2	1	23	757	779	757	779	0.98
8	18	0.011	2.4	10.9	6.5	1	23	785	807	785	808	0.96
9	18	0.00099	0.22	14.2	2.1	1	23	823	845	823	845	0.97
10	18	0.046	10	8.9	0.3	1	23	862	885	862	885	0.93
11	18	0.066	15	8.4	0.4	1	23	891	913	891	913	0.98
12	18	0.016	3.6	10.4	0.3	2	23	937	958	936	958	0.96
13	18	0.3	66	6.4	4.8	1	23	964	986	964	986	0.99
14	18	1.7e-06	0.00039	22.9	0.8	1	23	992	1014	992	1014	0.95
15	18	0.041	9.1	9.1	1.2	1	23	1020	1042	1020	1042	0.97
16	18	0.032	7.2	9.4	2.2	1	23	1048	1070	1048	1070	0.96
17	18	1.4e-06	0.00032	23.1	1.2	1	23	1076	1098	1076	1098	0.98
18	18	0.00014	0.032	16.9	0.5	3	23	1106	1126	1105	1126	0.95

Sequence Information

Coding Sequence: ATGGATGAGTCGGTCGATACTGTCAAGATGGTGTTGAAAAGTGACACTGGGGACTCTGTAACTGTCTGTATGTACCCAGACAATGCTTTCGAAGAGTTCAGCAACAAGTTCCATAACCATCTTGACCTACCGTTGGATTGCCAGTTGAAAGTGGAAGACAGCCATTTCTTGACAAAAGAAAAAGATTCGGAACTGTTGTTTGGTGATCTTGGATTGATTTCCTCCGTGAGCGATGTCACGGACGTTACATTTGTGAGCACAGACCCTGAGACACTCTCTATCACAAGTGATAACAACTTTGTCATGTCACCAGTCCAGCAGTCGGTGTACCCCCAGGATGTCAGGAGCTGCATGAAACCAGAAGTGTCTTATGACTCGTGCTCACCTGTATGGAGCAAAGTGGTCTCGTTTAGATGCGCGGTCCCAACATGTGTCAATACCAAGGACACCTGGCCCAGGAAGAAGTTTTTCAAGTTCCCCATCGCCAAAGATAGgTGTCATCAGTGGCTGCAGCTTTGCAGGCGGGAGGATCTTCTAGAGGAGCCGAGTGAAATGGTCGGCAGCCTCTATGTTGTGTGCTCAGATCACTTCATTCAAGACCACTTTGTGACGGTGGCTCGTAAAGCTCTGACCAAAATGGCAGTGCCGACAATATTTCCTGCTTCTGACGATATACCGACAAAACAGTCTGTAAATACCAAAGAGTTAGAAAATGAAAGTATACACTCTGAGGAGAAAGAAGAAGATGacattgatgatgatgatgttttttatgtttgtgacAGTGATACTGAAGATTTAGGAGAGTTAACGGGACTGCAGAAATCATATTTGGAGAGGGGCAGCAGCAGTTCCGACTCTGAGAGGGATGTAGACTCCCCTGGTCAACTGTGCAGACTTTGTGGGTGTGTCTCTGAGGATGCAGCATATATCTACGGCAGCACTGAGGAGGATTTGGGGCTCGCGACCAAGATCAACACCTTGCTGCCAATCATTGTTGAGAAAAGTGACCCACTTCCCAAGCAGGTATGCATGAACTGCCTCTCTAAATTGGAAACCTGCTTTGAGCTGACTAAATCATGTCTCAGGACAGACCGATGGTTGAATCGTTTGAAGAGGAAGAATCTCTTCAGgAGTCATACTTTAATGAAAGTTCATCCTAGAGAAGTTTCTCAGAAAAGTTGCAATGGTTTCATAAAACTAGAAGTAACTAATTCCACATCTCTCTGTGAGCAGACAAGAGATGATAGCTCTACAAACGATTCTACTGATGTCAAAAGAAAGTAcgatgaaaataactttgacaATAGCGCCATTGAAAAGTTGGTTACAAGTTGCTATTCTTGTCCGTTTTGCTCAGATGGTACCATGATCATGCAAAAAACCTCATCCCATGATTCAACTCTAGTATGCGGAGACATAAAAACAACAGAACAAAGTATTAACTCTAGCGCGTTACCAAACGATAAATCCGcaaaacaaatgttgaacgATGAGTCCGTTTCTACGAGTGATACAGAAATACATCCTGAGCTACCGAATGTATTTTACGAGGTCAGAGATGAGCACGGTAATAAATATGCGATGGTTGAGCCGACGCCAAGTTGGTGGAATGAGGATGGTAACATGGGAAACACGGAGATAATAATCCATGCAGTGAACCCGAATAAATTGAGTGAAGAACCATGGCCGACTTTGAATGATGCAGGTGAAAGTGTTGACCGCCATCGCTGCCTCCTCTGTGGCACAAGTTTCCAGACTCTGGAACTGTGTCTGGAGCACAGCTACTCTCACCCAGACACCGAAGGTTTTGTTTGTACCCTGTGTCTCCTTCACTTTTCAAACAAATCTGAACTCACCAGTCACATGGAAGATCATAGAGCAGACGAGAAACGACTCTTCAGAGTGGAAGGCTCTAAACGCCTCATTTGCACTGTCTGTGGCAGGAAGTTCAATAACGAGAGGACATGGAAGGCCCACTCTTGTTCCGTTAGTGAACCTTCAAAAAAACTGTTCAAGTGCACAGAGTGCAACAAATCTTTCCTCACTGAGGAACGTCTCACATTCCATGGGATCTTGCACAAACTCAAGCAGCCCAACCACTGTGAGAAGTGTGACAGGCAATTTGAGCACAGGAGCGCTTTCTACCAACACTGGCGGCTTGTCCACGAAGGTGAACGGCCGTTTTGCTGCCATAAATGTGGCAAAACATTCTACTCTCACTCGAGGCTTGTCACACACCTGCGCACCCACTCAGGTGAACGGCCTTACGAGTGTGATGTATGTCACCATAAGTTCTATGACAAGGAGACACTCAAAGGTCACTACGTCACACACATGAACACGAAGCCATTTCAGTGCCATCTCTGTGGAGCTTTTTGTGGCCGCCGAAGTTTATTTAACCAACATTTGAAAGTTCACCATAGTGGTCCAAATGGCCCGAAGCGAGCCCCGTCCCTCATACACTATTTCTGTAAGTCATGCAACAAGACATTCACGAGTTCCAATGAAGTTTTAACTCACCGAGCTACCCACTGGCACCGAGAAGAGAAAGACAAAAATCGCGAAGATAATCCTGTGACCCACGATTGTGAGTACTGTGGGAAGGGCTACTTGTCTATAGCCGAATTGGCAAAACATCGGAAACTAGAGCATGCGGAAGAAAAGCCGTACGTTTGTAGCATCTGTAGTGAGTTGACCAAGACACTTTACGAAGCGAGGGCACACAGGAAAAGTCACACAACAGTGTCGAGTGTTTCAGAGGAGTCCGGCGGGAACATGAAGGAAGGGGACAAGTGCGCATCATTGGTTTGTGAAGAGTGTGGGGCCCAGTGTGTAGGAAGTAGGAAGCTGAAGGCACATTTGAAGCTACACAGGGCGGAGACAGTCTACCAGTGCGGAATGTGCTGCCGGAACTTCCCCAACCACCGGCGGCTGATTCTTCACCAACGCATGCACTCCGGAGAGAAGCCGTACCCTTGTCCAGATTGTGGTAAGAGGTTCTCTCAGTCATCAGCACTTCACACACATTCGTTACTTCACACTGGAGAGAAACCCCATATATGTGACCTGTGTGACGCTACCTTCAGGATCAAGGCGGACAGAGACAACCACCGGCGCACGCACACCGGAGAGCGGCCTTACCGCTGCGAGTACTGCTCCAAACAGTTCCGGACCGGCCAGGTGTATTACCAACACCGCATGATCCACACGGGGGAGCGGCGTTTCCCTTGCAATGTGTGTGGCAAGGCGTTCAAACGCTCTCACACCCTCGTGGTCCACAAGCGTATCCATACAGGAGAAAAGCCCAATATTTGCGACGTCTGTGGCAAAGGTTTCCGCCAACGGACGGATATGAGGAAACACAGGGCTCTTCATGGCTCGTGA
Protein Sequence: MDESVDTVKMVLKSDTGDSVTVCMYPDNAFEEFSNKFHNHLDLPLDCQLKVEDSHFLTKEKDSELLFGDLGLISSVSDVTDVTFVSTDPETLSITSDNNFVMSPVQQSVYPQDVRSCMKPEVSYDSCSPVWSKVVSFRCAVPTCVNTKDTWPRKKFFKFPIAKDRCHQWLQLCRREDLLEEPSEMVGSLYVVCSDHFIQDHFVTVARKALTKMAVPTIFPASDDIPTKQSVNTKELENESIHSEEKEEDDIDDDDVFYVCDSDTEDLGELTGLQKSYLERGSSSSDSERDVDSPGQLCRLCGCVSEDAAYIYGSTEEDLGLATKINTLLPIIVEKSDPLPKQVCMNCLSKLETCFELTKSCLRTDRWLNRLKRKNLFRSHTLMKVHPREVSQKSCNGFIKLEVTNSTSLCEQTRDDSSTNDSTDVKRKYDENNFDNSAIEKLVTSCYSCPFCSDGTMIMQKTSSHDSTLVCGDIKTTEQSINSSALPNDKSAKQMLNDESVSTSDTEIHPELPNVFYEVRDEHGNKYAMVEPTPSWWNEDGNMGNTEIIIHAVNPNKLSEEPWPTLNDAGESVDRHRCLLCGTSFQTLELCLEHSYSHPDTEGFVCTLCLLHFSNKSELTSHMEDHRADEKRLFRVEGSKRLICTVCGRKFNNERTWKAHSCSVSEPSKKLFKCTECNKSFLTEERLTFHGILHKLKQPNHCEKCDRQFEHRSAFYQHWRLVHEGERPFCCHKCGKTFYSHSRLVTHLRTHSGERPYECDVCHHKFYDKETLKGHYVTHMNTKPFQCHLCGAFCGRRSLFNQHLKVHHSGPNGPKRAPSLIHYFCKSCNKTFTSSNEVLTHRATHWHREEKDKNREDNPVTHDCEYCGKGYLSIAELAKHRKLEHAEEKPYVCSICSELTKTLYEARAHRKSHTTVSSVSEESGGNMKEGDKCASLVCEECGAQCVGSRKLKAHLKLHRAETVYQCGMCCRNFPNHRRLILHQRMHSGEKPYPCPDCGKRFSQSSALHTHSLLHTGEKPHICDLCDATFRIKADRDNHRRTHTGERPYRCEYCSKQFRTGQVYYQHRMIHTGERRFPCNVCGKAFKRSHTLVVHKRIHTGEKPNICDVCGKGFRQRTDMRKHRALHGS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448922;
90% Identity: iTF_01450647;
80% Identity: iTF_01444834;