Tmon002698.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:814257-819188[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.001 0.21 14.2 3.0 2 23 69 90 68 90 0.96 2 19 3e-05 0.0063 19.0 1.8 1 23 96 118 96 118 0.98 3 19 0.00014 0.03 16.9 0.5 1 23 124 146 124 146 0.98 4 19 0.00021 0.044 16.3 0.1 2 23 153 174 152 174 0.95 5 19 0.00085 0.18 14.4 0.4 1 23 180 203 180 203 0.98 6 19 4.8e-05 0.0099 18.4 3.0 3 23 215 235 214 235 0.97 7 19 5.7e-05 0.012 18.1 0.1 1 23 241 263 241 263 0.95 8 19 4.9e-07 0.0001 24.6 0.4 2 23 270 291 269 291 0.97 9 19 0.00082 0.17 14.5 2.1 2 23 369 390 368 391 0.94 10 19 7.8e-05 0.016 17.7 0.3 1 23 398 420 398 420 0.97 11 19 2.6e-05 0.0054 19.2 3.8 1 23 426 448 426 448 0.98 12 19 0.0015 0.32 13.6 0.4 2 23 455 476 454 476 0.97 13 19 0.00026 0.053 16.1 0.7 1 23 482 504 482 504 0.96 14 19 0.00019 0.04 16.4 0.3 1 23 510 533 510 533 0.95 15 19 1.9e-05 0.0039 19.6 2.8 2 23 544 565 543 565 0.98 16 19 0.0043 0.89 12.2 3.8 3 23 573 593 571 593 0.97 17 19 8.7e-06 0.0018 20.7 2.2 2 23 600 621 600 621 0.97 18 19 2.8e-07 5.7e-05 25.4 0.8 1 23 627 649 627 649 0.98 19 19 0.071 15 8.4 3.0 1 21 655 675 655 676 0.93
Sequence Information
- Coding Sequence
- ATGCACACAGCACCTGTTTCTTTcaagaaagaaaacaataaaatcgAGCCTTTTCCAAAGTTAGAAGAGAAATCTTTTAAACCTCAAATAATACCAAACAAGGGCCCTTTGCTTGGTTCCAGGGAAAAGTCTcgagtatataatataaaaattatcaacgAAGCGAAACTTGGCTGTGAATCAAACTCTGGTAATAAGGAACTTACTTGCGACAAGTGTGGCAGAAAATGTGTTTCCAAAAAACGTCTGAAGCAACACATGGTCATCCATAGTGAAAACCGACCATTCAGCTGTGAGATATGTTTCCGGAGATTTAAACGCTCATATGAGGTGAATATGCACATGAAGATACATGCACAACAGAAGAAGTATACCTGTGAGATATGTGACTATGCCACAACGCAGAAGCCATACCTGAATGCCCATAACAAACGTCATTTGCGTGAATTCAAAGTAACGTGTGACATCTGTGGGAAGGGTTTCTATTCTGAATTTGATCTCAAGGAGCACGCCAATGCGCACACTGGAGATAAAAGCTTCCAATGTGATCTGTGCGGGAAGGGGTACCTATACAAGAACAACCTGGTAGCCCACAAGAAAACAGCACACCCCGTCGTGCAGAGAGACGAGAAGGCCAACTGCTGCGAGGTTTGTGGTAAAACGTTTTCTTATAAGAAGTCGATGTTGCTGCACATGAGGCTCCACACAGGAAACGGAGGTTTCCTCTGCGACGTTTGCGGCAAAGCTCTGGCCAATAACGAGTCTTTGAAGGTGCACAAACGCATGCACACTGGTGAGAAACCTGTCGTCTGCAACGTGTGCGACAAGGCGTTCACATCCAGAAACTATCTCAGGGTCCATCTGCGGACTCATACAGGTGAACGCCCGTTTGCGAGCAAAGGAAATAATAAGCTAAATATCTGTGATGGCGTCGCTTCGGCCTTCAAGAGGACCACTAAACCCCAAAGGAAAATTCAAAAGTACGTTACCAAGTTGTCTATCAAACGACACTTGATAAATCTGAAGCAAGAAATACCCGATTATATAGGACACGAGGTTGACGTTTTGAACGAGGGCACCACCACCGCGGGGTGTAATCTTTTGACGTGCCAGATATGTTTCATGCCTTTCCCGAGTCCGCACAAACTAAATGTTCACCTAAAATCTCACCATTGTAAACTCAAAGAAGATTACAGTTGTAACGTTTGTGGCAAGGAGTTTGTGTCGAAGAAGATTCTGAGGAGGCATCTGGTCGTCCACAGCAAAGATCGCCCGTACACTTGTAACATCTGTCACAAAACTTTCAAGAGGCCTTACGACATCACGATCCACAGCAAGAAGCATACGGGCGAGAACAAGCTCTACTGCGATATCTGTGAGTACAGCACCATCTATCGGTCGGCGCTGGCAACCCACCGAAAGAGACACTTTGAGGAGTACAAGTTCCGCTGCGAGATCTGTGGTAAGGGCTTCTTTGTCAACACTTGGCTGCAGGAGCACAAGAACTTTCACACAGGTGAGAAGCCATTCCAATGCGACCTGTGCGGGAAGGCATTTCCTTACACGCGGTATTTGGTCGCTCACAAGAAAGCGAACCACCCAGACGCACAGAACCCGGCCAAGCTAAACCAGTGTGACACGTGCGGTAAGACGTTTGCACACAGGAAATCGCTGACCCTACACGTCAAGTCACACACAGGTGAGAACGTGTGTCTGTGCGACATATGCGGCAAGGCGCTCACGAATAAAGAGCACCTCAAGTTTCATCGGCGCATCCATACGGGTGAGAAACCGAACGTTTGTGATGTGTGTGGTAAGGCATTCAGCAAACGGTGCAATCTCAAACTTCATGAACGGACGCACACAGGGGAGCGCCCTTATACTTGTGATATCTGCGGCAAGGCATTCACGCAGCGCTCCACGCTCGTGATTCATAAACGCTACCACACAGGTCAAAGACCTTATTTGTGTCATTTGTGTCACAAGGGATTTGTATGCAAAGCTCTCCTAAATGCTCATCAAAAGAGTAATTGTGTTTAA
- Protein Sequence
- MHTAPVSFKKENNKIEPFPKLEEKSFKPQIIPNKGPLLGSREKSRVYNIKIINEAKLGCESNSGNKELTCDKCGRKCVSKKRLKQHMVIHSENRPFSCEICFRRFKRSYEVNMHMKIHAQQKKYTCEICDYATTQKPYLNAHNKRHLREFKVTCDICGKGFYSEFDLKEHANAHTGDKSFQCDLCGKGYLYKNNLVAHKKTAHPVVQRDEKANCCEVCGKTFSYKKSMLLHMRLHTGNGGFLCDVCGKALANNESLKVHKRMHTGEKPVVCNVCDKAFTSRNYLRVHLRTHTGERPFASKGNNKLNICDGVASAFKRTTKPQRKIQKYVTKLSIKRHLINLKQEIPDYIGHEVDVLNEGTTTAGCNLLTCQICFMPFPSPHKLNVHLKSHHCKLKEDYSCNVCGKEFVSKKILRRHLVVHSKDRPYTCNICHKTFKRPYDITIHSKKHTGENKLYCDICEYSTIYRSALATHRKRHFEEYKFRCEICGKGFFVNTWLQEHKNFHTGEKPFQCDLCGKAFPYTRYLVAHKKANHPDAQNPAKLNQCDTCGKTFAHRKSLTLHVKSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHERTHTGERPYTCDICGKAFTQRSTLVIHKRYHTGQRPYLCHLCHKGFVCKALLNAHQKSNCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447747; iTF_01450790; iTF_01444989; iTF_01446807;
- 90% Identity
- iTF_01447747; iTF_01450790; iTF_01444989; iTF_01446807;
- 80% Identity
- -