Tgen026318.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002107.1:130955-135855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0002 0.038 16.4 2.3 1 23 10 32 10 32 0.98 2 19 0.00013 0.024 17.0 0.5 1 23 38 60 38 60 0.98 3 19 0.0002 0.037 16.5 0.1 2 23 67 88 66 88 0.95 4 19 0.0011 0.2 14.1 0.5 1 23 94 117 94 117 0.98 5 19 4.6e-05 0.0086 18.4 3.0 3 23 129 149 128 149 0.97 6 19 5.2e-05 0.0097 18.3 0.1 1 23 155 177 155 177 0.95 7 19 4.5e-07 8.4e-05 24.8 0.4 2 23 184 205 183 205 0.97 8 19 1.9e-05 0.0036 19.6 1.8 1 23 211 233 211 233 0.98 9 19 0.00075 0.14 14.6 2.1 2 23 313 334 312 335 0.94 10 19 7.1e-05 0.013 17.8 0.3 1 23 342 364 342 364 0.97 11 19 2.4e-05 0.0044 19.3 3.8 1 23 370 392 370 392 0.98 12 19 0.0014 0.26 13.8 0.4 2 23 399 420 398 420 0.97 13 19 0.00023 0.044 16.2 0.7 1 23 426 448 426 448 0.96 14 19 0.00018 0.033 16.6 0.3 1 23 454 477 454 477 0.95 15 19 1.7e-05 0.0033 19.8 2.8 2 23 488 509 487 509 0.98 16 19 0.0039 0.74 12.3 3.8 3 23 517 537 515 537 0.97 17 19 8e-06 0.0015 20.8 2.2 2 23 544 565 544 565 0.97 18 19 2.5e-07 4.7e-05 25.6 0.8 1 23 571 593 571 593 0.98 19 19 0.065 12 8.5 3.0 1 21 599 619 599 620 0.93
Sequence Information
- Coding Sequence
- ATGGTCATCCATAGTGAGAACCGACCATTCAGCTGTGAGATATGTTTCCGGAGATTTAAACGCTCATATGAGGTGAATATGCACAGGAAGATACATGCGCAACAGAAGAAGTATACCTGTGAGATATGCGACTATGCCACAACGCAGAAGCCATACCTCAACGCCCATAACAAACGTCATTTGCGTGAATTCAAAGTAACGTGTGACATCTGCGGGAAAGGTTTCTATTCCGAATTTGATCTCAAGGAGCACGCCAATGCGCACACTGGAGATAAAAGCTTCCGGTGTGATCTTTGCGGCAAGGGGTACCTATACAAGAACAACCTGGTAGCCCACAAGAAAACGGCACACCCCGCCGTGCAGAGAGATGAGAAGGCCAACTGCTGCGATGTTTGTGGTAAAACGTTTTCTTATAAGAAGTCGATGTTGCTGCACATGAGGCTCCACACGGGAAATGGAGGTTTCCTCTGCGACGTTTGCGGCAAAGCTCTGGCCAATAACGAGTCTTTGAAGGTGCACAAACGCATGCACACAGGCGAGAAACCTGTCGTCTGCAACGTGTGCGACAAAGCGTTCACGTCCAGAAACTATCTCAGGGTCCATCTGCGGACTCATACAGGTGAACGTCCGTATGTGTGCGAACTGTGCGGTAAGGCGTTTACTCAATGTACTACACTAGTGATCCACAAGAGATACCATACAGGACAGAAACCATATAAGTTTGCGAGCAAAGGAAATAATAAGCTAAATATCTGTGATGGCGCCGCTTCGCCCTTCAAGAGGACCACTAAACCCAAAAGGAAAATTCAAAAGTATGTTACCAAGTTGTCTATCAAACGACACTTGATAAATCTGAAGCAAGAAATACCCGACTATATAGGACACGAGGTTGACGTTTTGAACGAGGGCACCACCACCGCGAGGTGTAATCTTTTGACGTGCCAGATATGTTTCATGCCTTTCCCGAGTCCGCACAAACTAAATGTTCACCTAAAATCTCACCATTGTAAACTCAAAGAAGACTACAGTTGTAACGTGTGTGGGAAGGAGTTTGTGTCGAAGAAGATTCTGAGGAGGCATCTGGTCGTCCACAGCAAAGACCGCCCGTACACTTGTAACATCTGCCACAAAACTTTCAAGAGGCCTTACGACATCACGATCCACAGCAAGAAGCATACTGGAGAGAATAAGCTCTACTGCGATATCTGCGAATACAGCACCATCTATCGGTCGGCGCTGGCAACCCACCGTAAGAGACACTTTGAGGAGTACAAGTTCCGCTGCGAGATCTGTGGTAAGGGCTTCTTTGTCAACACTTGGCTGCAGGAGCACAAGAACTTTCACACGGGTGAGAAGCCGTTCCAATGTGACCTGTGCGGGAAGGCATTTCCGTACACGCGGTATTTGGTCGCTCACAAGAAAGCGAACCATCCCGACGCACAGAACCCGGCCAAGCTAAACCAGTGTGACACGTGCGGTAAGACGTTTGCACACAGGAAATCTCTGACCCTACACGTCAAGTCACACACGGGTGAGAACGTGTGTCTGTGCGACATATGCGGCAAGGCGCTCACGAATAAGGAGCACCTCAAGTTTCATCGGCGCATCCATACGGGTGAGAAACCGAACGTTTGTGATGTGTGTGGTAAGGCGTTCAGCAAACGGTGCAATCTCAAACTTCATGAACGGACGCATACAGGGGAGCGCCCATATACTTGTGATATCTGCGGCAAGGCGTTCACGCAGCGCTCCACGCTCGTGATTCATAAACGCTACCACACAGGCCAAAGACCTTATTTGTGTCATTTGTGTCACAAGGGATTTGTATGCAAAGCTCTCCTAAATGCTCATCAAAAGAGTAATTgtgtttaa
- Protein Sequence
- MVIHSENRPFSCEICFRRFKRSYEVNMHRKIHAQQKKYTCEICDYATTQKPYLNAHNKRHLREFKVTCDICGKGFYSEFDLKEHANAHTGDKSFRCDLCGKGYLYKNNLVAHKKTAHPAVQRDEKANCCDVCGKTFSYKKSMLLHMRLHTGNGGFLCDVCGKALANNESLKVHKRMHTGEKPVVCNVCDKAFTSRNYLRVHLRTHTGERPYVCELCGKAFTQCTTLVIHKRYHTGQKPYKFASKGNNKLNICDGAASPFKRTTKPKRKIQKYVTKLSIKRHLINLKQEIPDYIGHEVDVLNEGTTTARCNLLTCQICFMPFPSPHKLNVHLKSHHCKLKEDYSCNVCGKEFVSKKILRRHLVVHSKDRPYTCNICHKTFKRPYDITIHSKKHTGENKLYCDICEYSTIYRSALATHRKRHFEEYKFRCEICGKGFFVNTWLQEHKNFHTGEKPFQCDLCGKAFPYTRYLVAHKKANHPDAQNPAKLNQCDTCGKTFAHRKSLTLHVKSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHERTHTGERPYTCDICGKAFTQRSTLVIHKRYHTGQRPYLCHLCHKGFVCKALLNAHQKSNCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448782;
- 90% Identity
- iTF_01448782;
- 80% Identity
- -