Tshe003745.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000162.1:205289-210575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.1e-05 0.0085 18.9 1.9 1 23 10 32 10 32 0.98 2 19 0.00012 0.033 17.0 0.5 1 23 38 60 38 60 0.98 3 19 0.00018 0.05 16.5 0.1 2 23 67 88 66 88 0.95 4 19 0.00073 0.2 14.6 0.4 1 23 94 117 94 117 0.98 5 19 4.1e-05 0.011 18.5 3.0 3 23 129 149 128 149 0.97 6 19 4.9e-05 0.013 18.3 0.1 1 23 155 177 155 177 0.95 7 19 6e-07 0.00016 24.3 0.4 3 23 185 205 183 205 0.97 8 19 1.8e-05 0.005 19.6 1.8 1 23 211 233 211 233 0.98 9 19 0.0007 0.19 14.6 2.1 2 23 314 335 313 336 0.94 10 19 6.7e-05 0.018 17.8 0.3 1 23 343 365 343 365 0.97 11 19 2.2e-05 0.0061 19.3 3.8 1 23 371 393 371 393 0.98 12 19 0.0013 0.36 13.8 0.4 2 23 400 421 399 421 0.97 13 19 0.00022 0.06 16.2 0.7 1 23 427 449 427 449 0.96 14 19 0.00017 0.046 16.6 0.3 1 23 455 478 455 478 0.95 15 19 1.6e-05 0.0045 19.8 2.8 2 23 489 510 488 510 0.98 16 19 0.0037 1 12.3 3.8 3 23 518 538 516 538 0.97 17 19 7.5e-06 0.002 20.8 2.2 2 23 545 566 545 566 0.97 18 19 2.4e-07 6.4e-05 25.5 0.8 1 23 572 594 572 594 0.98 19 19 0.017 4.7 10.3 3.2 1 21 600 620 600 621 0.95
Sequence Information
- Coding Sequence
- ATGGTCATCCATAGTGAAAACCGACCATTCAGCTGTGAGATATGTTTCCGGAAATTTAAACGCTCATATGAGGTGAATATGCACATGAAGATACACGCACAACAGAAGAAGTATACCTGTGAGATATGTGACTATGCCACAACGCAGAAGCCATACTTGAATGCCCATAACAAACGCCATTTGCGTGAATTCAAAGTAACGTGTGAAATCTGCGGGAAGGGTTTCTATTCTGAATTTGATCTCAAAGAGCACGCCAATGCGCACACTGGAGATAAAAGCTTCCAGTGTGATCTGTGCGGCAAGGGGTACCTATACAAGAACAACCTGGTAGCCCACAAGAAAACGGCACACCCCGCCGTGCAGAGAGACGAGAAGGCCAACTGCTGCGAGGTTTGTGGTAAAACGTTTTCTTATAAGAAGTCGATGTTGCTGCACATGAGGCTCCACACAGGAAACGGAGGTTTCCTCTGCGACGTTTGCGGCAAAGCTCTGGCCAATAACGAGTCTTTGAAGGTGCACAAACGCATGCACACTGGCGAGAAACCTGTCATTTGCAACGTGTGTGACAAGGCGTTCACATCCAGAAACTATCTCAGGGTCCATCTGCGGACTCATACAGGTGAACGCCCGTACGTGTGTGAACTGTGTGGTAAGGCGTTTACTCAATGCACTACACTGGTGATCCACAAGAGATACCATACAGGACAGAAACCATATAAGTTTGCGAGCAAAGGAAATAATAAGCTAAATATCTGTGATGGCGTCGCTTCGGCCTTCAAGAGGACCCCTAAACCCCAAAGGAAAATTCAAAAGTACGTTACCAAGTTGTCTATCAAACGACACTTGATAAATTTGAAGCAAGAAATACCCGACTATATCGGACACGAGGTTGACGTTTTGAACGAGGGAACCACCACCACCACGGGGTGTAATCTTTTGACGTGCCAGATATGTTTCATGCCTTTCCCGAGTCCGCACAAACTAAACGTTCACCTAAAATCTCACCATTGTAAACTCAAAGAAGATTACAGTTGTAACGTTTGTGGGAAGGAGTTTGTGTCGAAGAAGATTCTGAGGAGGCATCTGGTCGTCCACAGTAAAGACCGCCCGTACACTTGTAACATCTGCCACAAAACTTTCAAGAGGCCTTACGACATCACGATCCACAGCAAGAAGCATACGGGCGAGAACAAGCTCTACTGCGATATCTGCGAGTACAGCACCATCTATCGGTCGGCACTGGCAACCCACCGTAAGAGACACTTTGAGGAGTACAAGTTCCGCTGCGAGATCTGCGGTAAGGGCTTCTTTGTCAACACTTGGCTGCAGGAGCACAAGAACTTTCACACGGGCGAGAAGCCGTTCCAATGCGACCTGTGCGGGAAGGCATTTCCTTACACACGGTATTTGGTCGCTCACAAGAAAGCGAACCACCCCGACGCACAGAACCCGGCCAAACTAAACCAGTGTGACACGTGTGGTAAGACATTTGCACACAGGAAATCGCTGACCCTACATGTCAAGTCACACACAGGTGAGAATGTGTGTCTGTGCGACATATGCGGCAAGGCGCTCACAAATAAGGAGCACCTCAAGTTTCATCGGCGCATTCATACGGGTGAGAAACCGAACGTTTGTGATGTGTGCGGTAAGGCATTCAGCAAACGGTGCAATCTCAAACTTCATGAACGGACGCACACAGGGGAGCGCCCTTATACTTGTGATATCTGCGGCAAGGCGTTCACGCAGCGCTCCACGCTCGTGATTCATAAACGCTACCACACAGGTCAAAGACCTTATATGTGTCATTTGTGTCACAAGGGATTTGTATGCAAAGCTCTCCTAAATGCTCATCAAAAGAGTAATTGTGTTTAA
- Protein Sequence
- MVIHSENRPFSCEICFRKFKRSYEVNMHMKIHAQQKKYTCEICDYATTQKPYLNAHNKRHLREFKVTCEICGKGFYSEFDLKEHANAHTGDKSFQCDLCGKGYLYKNNLVAHKKTAHPAVQRDEKANCCEVCGKTFSYKKSMLLHMRLHTGNGGFLCDVCGKALANNESLKVHKRMHTGEKPVICNVCDKAFTSRNYLRVHLRTHTGERPYVCELCGKAFTQCTTLVIHKRYHTGQKPYKFASKGNNKLNICDGVASAFKRTPKPQRKIQKYVTKLSIKRHLINLKQEIPDYIGHEVDVLNEGTTTTTGCNLLTCQICFMPFPSPHKLNVHLKSHHCKLKEDYSCNVCGKEFVSKKILRRHLVVHSKDRPYTCNICHKTFKRPYDITIHSKKHTGENKLYCDICEYSTIYRSALATHRKRHFEEYKFRCEICGKGFFVNTWLQEHKNFHTGEKPFQCDLCGKAFPYTRYLVAHKKANHPDAQNPAKLNQCDTCGKTFAHRKSLTLHVKSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHERTHTGERPYTCDICGKAFTQRSTLVIHKRYHTGQRPYMCHLCHKGFVCKALLNAHQKSNCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448782;
- 90% Identity
- iTF_01448782;
- 80% Identity
- -