Tbar005148.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:200611-205519[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00032 0.072 15.7 1.6 1 23 10 32 10 32 0.98 2 19 0.00013 0.029 17.0 0.5 1 23 38 60 38 60 0.98 3 19 0.00019 0.043 16.4 0.1 2 23 67 88 66 88 0.95 4 19 0.0011 0.24 14.1 0.5 1 23 94 117 94 117 0.98 5 19 4.5e-05 0.01 18.4 3.0 3 23 129 149 128 149 0.97 6 19 5e-05 0.011 18.3 0.1 1 23 155 177 155 177 0.95 7 19 4.4e-07 9.8e-05 24.8 0.4 2 23 184 205 183 205 0.97 8 19 1.9e-05 0.0043 19.6 1.8 1 23 211 233 211 233 0.98 9 19 0.00073 0.16 14.6 2.1 2 23 315 336 314 337 0.94 10 19 6.9e-05 0.016 17.8 0.3 1 23 344 366 344 366 0.97 11 19 2.3e-05 0.0052 19.3 3.8 1 23 372 394 372 394 0.98 12 19 0.0014 0.31 13.8 0.4 2 23 401 422 400 422 0.97 13 19 0.00023 0.051 16.2 0.7 1 23 428 450 428 450 0.96 14 19 0.00017 0.039 16.6 0.3 1 23 456 479 456 479 0.95 15 19 1.7e-05 0.0038 19.7 2.8 2 23 490 511 489 511 0.98 16 19 0.0038 0.86 12.3 3.8 3 23 519 539 517 539 0.97 17 19 7.8e-06 0.0017 20.8 2.2 2 23 546 567 546 567 0.97 18 19 2.4e-07 5.5e-05 25.5 0.8 1 23 573 595 573 595 0.98 19 19 0.063 14 8.5 3.0 1 21 601 621 601 622 0.93
Sequence Information
- Coding Sequence
- ATGGTCATCCATAGTGAGAACCGGCCATTCAGCTGTGAGATATGTCTCCGGAGATTTAAACGCTCATATGAGGTGAATATGCACAGGAAGATACATGCGCAACAGAAAAAGTATACCTGTGAGATATGCGACTATGCCACGACGCAGAAGCCATACCTGAACGCCCATAACAAACGTCATTTGCGTGAATTCAAAGTTACGTGTGACATCTGCGGGAAGGGTTTCTATTCTGAATTTGATCTCAAAGAGCACGCAAATGCGCACACTGGAGATAAAAGCTTCCGGTGTGATCTTTGCGGCAAGGGGTACCTATACAAGAACAACCTGGTAGCCCACAAGAAAACTGCACACCCCGCCGTGCAGAGAGATGAGAAGGCCAACTGCTGCGATGTTTGTGGTAAAACGTTTTCTTATAAGAAGTCGATGTTGCTGCATATGAGGCTCCACACGGGAAACGGAGGTTTCCTCTGCGACGTTTGCGGCAAAGCTCTGGCCAATAACGAGTCTTTGAAGGTGCACAAACGCATGCACACAGGCGAGAAACCTGTCGTCTGCAATGTGTGCGACAAAGCGTTCACGTCCAGAAACTATCTCAGGGTCCATCTACGGACTCATACAGGTGAACGTCCGTATGTGTGCGAACTGTGCGGTAAGGCGTTTACTCAATGTACTACATTAGTGATCCACAAGAGATACCATACAGGTCAGAAACCATATAAGTTTGCGAGCAAAGGAAATAATAAGCTAAATATCTGTGATGGCGTCGCTTCGCCCCCCTTCAAGAGGACCACTAAACCCAAaaggaaaattcaaaaatacgtTACCAAGCTGTCTATCAAACGACACTTGATAAATCTGAAGCAAGAAATACCCGACTATATAGGACACGAGGTTGACGTTTTGACCGAGGGCACCACCACCACCGCGAGGTGTAATCTTTTGACGTGCCAGATATGTTTCATGCCTTTCCCGAGTCCGCACAAACTAAATGTTCACCTAAAATCTCACCATTGTAAACTCAAAGAAGATTACAGTTGTAACGTGTGTGGGAAGGAGTTTGTGTCGAAGAAGATTCTGAGGAGGCATCTGGTCGTCCACAGCAAAGACCGCCCGTACACTTGTAACATCTGCCACAAAACTTTCAAGAGGCCTTACGACATCACGATCCACAGCAAGAAGCATACGGGCGAGAATAAGCTCTACTGCGATATCTGTGAATATAGCACCATTTATCGGTCAGCGCTGGCAACCCACCGTAAGAGACACTTTGAGGAGTACAAGTTCCGCTGCGAGATCTGTGGTAAGGGCTTCTTTGTCAACACTTGGCTGCAGGAGCACAAGAACTTTCACACGGGTGAGAAGCCGTTCCAATGCGACCTGTGCGGGAAGGCATTTCCGTACACGCGGTATTTGGTCGCCCACAAGAAAGCAAACCACCCCGACGCACAGAACCCGGCCAAGCTAAACCAGTGTGACACGTGCGGTAAGACGTTTGCACACAGGAAATCTCTGACCCTACACGTCAAGTCACACACGGGTGAGAACGTGTGTCTGTGCGACATATGCGGCAAGGCGCTCACGAATAAGGAGCACCTCAAGTTTCATCGGCGCATCCATACGGGTGAGAAACCGAACGTTTGTGATGTGTGTGGTAAGGCGTTCAGCAAACGGTGCAATCTCAAACTTCATGAACGGACGCACACAGGGGAGCGTCCATATACTTGTGATATCTGCGGCAAGGCATTCACGCAGCGCTCCACGCTCGTGATTCATAAACGCTACCACACAGGCCAAAGACCTTATTTGTGTCATTTGTGTCACAAAGGATTTGTATGCAAAGCTCTCCTAAACGCTCATCAAAAGAGTAATTgtgtttaa
- Protein Sequence
- MVIHSENRPFSCEICLRRFKRSYEVNMHRKIHAQQKKYTCEICDYATTQKPYLNAHNKRHLREFKVTCDICGKGFYSEFDLKEHANAHTGDKSFRCDLCGKGYLYKNNLVAHKKTAHPAVQRDEKANCCDVCGKTFSYKKSMLLHMRLHTGNGGFLCDVCGKALANNESLKVHKRMHTGEKPVVCNVCDKAFTSRNYLRVHLRTHTGERPYVCELCGKAFTQCTTLVIHKRYHTGQKPYKFASKGNNKLNICDGVASPPFKRTTKPKRKIQKYVTKLSIKRHLINLKQEIPDYIGHEVDVLTEGTTTTARCNLLTCQICFMPFPSPHKLNVHLKSHHCKLKEDYSCNVCGKEFVSKKILRRHLVVHSKDRPYTCNICHKTFKRPYDITIHSKKHTGENKLYCDICEYSTIYRSALATHRKRHFEEYKFRCEICGKGFFVNTWLQEHKNFHTGEKPFQCDLCGKAFPYTRYLVAHKKANHPDAQNPAKLNQCDTCGKTFAHRKSLTLHVKSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHERTHTGERPYTCDICGKAFTQRSTLVIHKRYHTGQRPYLCHLCHKGFVCKALLNAHQKSNCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448782;
- 90% Identity
- iTF_01448782;
- 80% Identity
- -