Tmon002700.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:827796-837417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 7.5 1.6e+03 2.0 0.7 2 23 176 196 176 196 0.87 2 32 0.00011 0.022 17.3 1.9 1 23 202 224 202 224 0.97 3 32 0.038 7.7 9.3 1.6 2 23 231 252 230 252 0.97 4 32 2.1e-06 0.00044 22.6 2.2 1 23 258 280 258 280 0.98 5 32 0.00013 0.026 17.0 1.4 1 23 286 308 286 308 0.98 6 32 0.0011 0.22 14.1 1.4 1 23 314 336 314 336 0.98 7 32 4.6e-06 0.00096 21.6 1.3 1 23 342 365 342 365 0.96 8 32 0.00037 0.076 15.6 0.3 1 23 375 397 375 397 0.95 9 32 3.1e-05 0.0064 19.0 0.1 1 23 404 426 404 426 0.95 10 32 9.7e-06 0.002 20.5 3.3 1 23 432 454 432 454 0.96 11 32 1e-05 0.0021 20.5 0.4 1 21 460 480 460 481 0.95 12 32 0.0024 0.5 13.0 2.5 3 23 536 556 534 556 0.95 13 32 6.3e-05 0.013 18.0 3.6 2 23 563 584 562 584 0.98 14 32 2.7e-05 0.0056 19.2 3.4 1 23 590 612 590 612 0.98 15 32 0.005 1 12.0 2.3 1 23 618 640 618 640 0.98 16 32 0.0016 0.32 13.6 0.5 1 23 646 668 646 668 0.96 17 32 0.0016 0.33 13.6 2.1 1 23 674 697 674 697 0.96 18 32 0.03 6.1 9.6 3.2 1 23 707 729 707 729 0.92 19 32 2.9e-06 0.00059 22.2 0.5 3 23 736 756 735 756 0.99 20 32 0.00037 0.076 15.6 0.6 1 23 762 784 762 784 0.98 21 32 0.00072 0.15 14.7 0.2 1 21 790 810 790 811 0.94 22 32 0.00018 0.037 16.5 1.4 2 23 863 884 862 884 0.96 23 32 7.1e-05 0.015 17.8 3.8 3 23 891 911 890 911 0.98 24 32 0.0021 0.44 13.2 1.0 1 23 917 939 917 939 0.98 25 32 0.00031 0.065 15.8 0.8 1 23 945 967 945 967 0.97 26 32 0.00019 0.039 16.5 1.4 1 23 973 995 973 995 0.97 27 32 0.00014 0.03 16.9 4.4 1 23 1001 1023 1001 1024 0.96 28 32 1.6e-05 0.0033 19.9 0.3 1 23 1034 1056 1034 1056 0.96 29 32 0.00023 0.048 16.2 0.3 1 23 1063 1085 1063 1085 0.96 30 32 1e-07 2.1e-05 26.8 1.5 1 23 1091 1113 1091 1113 0.99 31 32 1.9e-06 0.00039 22.8 2.0 1 23 1119 1141 1119 1141 0.98 32 32 5.1e-06 0.001 21.4 1.1 1 23 1147 1169 1147 1169 0.98
Sequence Information
- Coding Sequence
- ATGGCAATGAATCTACGAGCCATCCGGTGTGTTTTTAGTGTCACTCACGCTTCAGGAGAGGCAGAATATCACTGGAAGAGGAAGAGAGGTCAGGGCGACCTTCCACGAGCACAAACTGGTCTTGGAGATCTGGGGCTCTTCCACTGTTGGGTAATTCAAGGCATGTTGACGGAGTTCCTTTCAGACTTGGGCATGGTGCTCCTTTTGTTCGGGGGTCAGAAGCCTGGGCACAAACTTGGCGGCAATGCAGTGCATGTTAAAAATAGACATGAGGATTGTCCGCACTGGTCCGTATTACACATTCACGATGTAGGTCACTCTGACCTCTCTTTGTCTTTCAGTGACGTTCTGCAGCTTCTGAAGTGTGAGTCCCGCTCAAAACACACCAGACAGCTCGTAGCTTCATTGCCATCTAAAAATTGGCAATTTCTCAATGAATGTACAACAAGTATCAAGAAGGAGGAAACTTCTCCCCGAAAGAATTGTGTAGTTGTCCCTTCGAAAGAGGATAAATCGTCGTCAGAACAATGCGACTTGTGCGGAGAGACGTTGACGGCCCGACGCATGGTCTCTCACAAGAAGAAGCACAGCCTCGTCGGCCCTCACGTGTGCTCGGTCTGTGGGAAAATGTTCAACACCGAGTCGAACCTGTACTTCCACGTCAGGACGCACACGGTCTCGATAGCCATCAAGTGCGGGCTCTGCGACACTGTGTGTCTGTCTGAGAAACTCTTGAGAAGTCACATGAAGACCCACACTAAAGAGAGACCTTACAAATGTGAGGTTTGCGATAAAACATACAAGAGATCCTACGAGCTGCTGAAACACAAGAAAATACATACCGGCGTAAAGAACTTCAAGTGTAACATTTGTGACTATGTAACTACCTACAAAGCTTACTTagagattcataaaaaaagacACATGGGTGATTTCAAGTATCACTGTGAAATTTGCAGTAAAGGTTACTACACTAACACGGCGTTAGAAAGTCACAAAAACGTTCACACGGGGGATAAACCTTATCAGTGTTCCATCTgtggtaaatcatttatatacaaGTACAACATGATGGCTCATAAAAAACAGCTTCATCCGGATTCCGATTACGGCGTCGCGAGCTATGTGTGTCTCATCTGCAACAAGTCGTTTGCTTACAAGAAGTCCCTCCTGTTGCACAATGCAGTTCATTCTGGCGAGAACCAATCTTTCCTCTGCGATGTTTGCGGAAAAGCTCTGACTAGCAACGCGTCGCTTCAGGCCCACAGACGCATCCACACGGGGGAGAGACCGCATGCGTGTCAGACGTGTAACAAGGCGTTCAGTAAGCGTAGTACTTTACGCATTCACCTCCGGACTCATACGGGAGAGAGACCATACTATTGTAATGAGTGTGGCAAGACGTTCACCCAGCGGCCGTCGCTTGTTGTTCATAAGAGGTCTATTTCTGTCAACACGCGCCTTAGAAAACGAACTATAATTCAAACAGATCAGAATAACACCTCGAGCAATACATCGGAACTATCCAAGCGTCTCGCTGACGTCGACCGCAAGGAACCAAAACAATCTTGCAAGAAACTGCAAAAAACGAGCGTGTACCATTTGTGCGATATGTGTGGTAAAATGTTCAACAACCTTAGCACACTCTCTTTCCATCTGCGTTCGCATACCACAccagaattaataaaatgtgaatattgCGTCAAgactttcaaaaaaaataagcGCCTCAAGAGCCACATGAAGACCCACACGACGGAAAGGCCATATAAATGTGAGCTGTGTAACAAGACTTATAAGCGCTCGTTTGAGCTGACGAGTCACAAGAGACTTCATGAGGGggtgaaaaatttcaaatgtgacaTGTGTGAGTATGCCACGGTGTACAGGGCACATCTGGAGAGCCACAAGAAGCGACACACCGGGGACTTTAAATACCACTGCGAGATCTGCGGAAAAGGGTATTACACAAACACGGGACTTGAAGGTCATAAGAACGCTCATAAAGGTGAGAGACCGTATCAGTGCGCAGTTTGCGGTAAGTCCTTCCTCCACAAATACAACATGCTTGCGCACAAGAAACAGCTGCATCCCGACTCGGACCAGATTGTCAAGACATACGACTGCAACATCTGTCAGAAGAGTTTCAACTACAGGAAGACTCTCCTCTGTCACGTCGCCAGACACATGGGCCAGAAGTCGCTCTGCGATATCTGCGGCAAGGCGTTTGTGAACAACACGTCGCTGCAGTCTCACCGACGGATGCACACGGGTGAGCGGCCTTTCAGGTGCGAGACTTGTGGCAAGACCTTTGGCAAGAGGGCTATTCTGCGCGTTCACGAGCGGACACACACTGGAGAAAAACCGTACTCGTGTGAGGTTTGTGGGAAGTGTTTCGCTCAGCGTCCCCCCTTGGTCATACACAAGAGGTTATCGAGCGAAACTGCATCTGGTCAGACTGCGAGGTCTGACTGGAGTTCATCGATCCTCTCGACGAGACTTGGTTTGAGAGTTATGTGGTCCGGGGTTTCTCTAGTCAAGCAGCAAGAGAACGCAGACGGCAGGTCTCAGAACGGCTCTAAGCAGGAATGTCAGTCCTGCAACAAGGCGTTCAACAACAGGACGAAACTAGTGAGGCACTTACGAGAGCATGAATCCAAAGATAAGATCTGTAAGATATGCGGAAAGACTTTCTTCGGTCACAAAAAGTTGAGGAACCACATGCGGTCTCATTTGAAAGAAAGACCGTTTGTTTGCGACAGATGCAGTAGGGCGTACAAGACCCAATTCGAGCTTAATGGCCACAAGAAGATACACACTGCGGAGAAGAGTCACGTGTGTGATGTGTGCGGGTATGCCACCATATACAAGGCCTATTTGAAGGTCCATCAGAAAAGACACATGCGCCAGTTTAGGTTTAACTGCGACATTTGCGGGAAAGGGTACTACACAAACTGTGAGCTGCAGATCCATAAAAACGTCCACACGGGTGAGAAACCGTTCCAATGTGATGCTTGCGGGAAGGCGTACATACACAAGCACTATTTGGTCGCTCACCAGCGCTCGCACCATCCAGAACTGCAGGACAACATGACACCTTACTCATGCGAAATCTGTGGGAAAGTGTTTGCGTACAAAAAGAGTCTGATGATGCACACTAGCGCTCATATGGGGGAGAACCAAACCTACCTCTGCGACCTGTGTGGAAAGGCTATGACGAGCAATGCGTCGCTCAAAATTCACCGAAGGACCCACACGGGAGAGAGGCCGTACGTGTGCGACTCATGCGGTAAGAGTTTCAATCGCAGGAATAATTTGCGAATCCACCAGCGGACTCATACCGGCGAGAAACCATATTCGTGTGATCAGTGTGACAAGACTTTCACACAACGCTCGACGTTGGTGATTCACAGGCGGTATCACACGGGGCAGAGGCCGTACGTGTGTCAGTTGTGTGGCAAGGACTTTGTCTCTAAAACGCTGTTAAGGACCCATCAAAAGAGTCACGGACTTTAG
- Protein Sequence
- MAMNLRAIRCVFSVTHASGEAEYHWKRKRGQGDLPRAQTGLGDLGLFHCWVIQGMLTEFLSDLGMVLLLFGGQKPGHKLGGNAVHVKNRHEDCPHWSVLHIHDVGHSDLSLSFSDVLQLLKCESRSKHTRQLVASLPSKNWQFLNECTTSIKKEETSPRKNCVVVPSKEDKSSSEQCDLCGETLTARRMVSHKKKHSLVGPHVCSVCGKMFNTESNLYFHVRTHTVSIAIKCGLCDTVCLSEKLLRSHMKTHTKERPYKCEVCDKTYKRSYELLKHKKIHTGVKNFKCNICDYVTTYKAYLEIHKKRHMGDFKYHCEICSKGYYTNTALESHKNVHTGDKPYQCSICGKSFIYKYNMMAHKKQLHPDSDYGVASYVCLICNKSFAYKKSLLLHNAVHSGENQSFLCDVCGKALTSNASLQAHRRIHTGERPHACQTCNKAFSKRSTLRIHLRTHTGERPYYCNECGKTFTQRPSLVVHKRSISVNTRLRKRTIIQTDQNNTSSNTSELSKRLADVDRKEPKQSCKKLQKTSVYHLCDMCGKMFNNLSTLSFHLRSHTTPELIKCEYCVKTFKKNKRLKSHMKTHTTERPYKCELCNKTYKRSFELTSHKRLHEGVKNFKCDMCEYATVYRAHLESHKKRHTGDFKYHCEICGKGYYTNTGLEGHKNAHKGERPYQCAVCGKSFLHKYNMLAHKKQLHPDSDQIVKTYDCNICQKSFNYRKTLLCHVARHMGQKSLCDICGKAFVNNTSLQSHRRMHTGERPFRCETCGKTFGKRAILRVHERTHTGEKPYSCEVCGKCFAQRPPLVIHKRLSSETASGQTARSDWSSSILSTRLGLRVMWSGVSLVKQQENADGRSQNGSKQECQSCNKAFNNRTKLVRHLREHESKDKICKICGKTFFGHKKLRNHMRSHLKERPFVCDRCSRAYKTQFELNGHKKIHTAEKSHVCDVCGYATIYKAYLKVHQKRHMRQFRFNCDICGKGYYTNCELQIHKNVHTGEKPFQCDACGKAYIHKHYLVAHQRSHHPELQDNMTPYSCEICGKVFAYKKSLMMHTSAHMGENQTYLCDLCGKAMTSNASLKIHRRTHTGERPYVCDSCGKSFNRRNNLRIHQRTHTGEKPYSCDQCDKTFTQRSTLVIHRRYHTGQRPYVCQLCGKDFVSKTLLRTHQKSHGL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445837; iTF_01444979; iTF_01447743;
- 90% Identity
- iTF_01444979;
- 80% Identity
- -