Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000211.1:179353-187841[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 5.8 1.3e+03 2.3 0.8 2 23 9 29 9 29 0.88

2 32 8.9e-05 0.02 17.5 1.9 1 23 35 57 35 57 0.97

3 32 0.031 6.9 9.5 1.6 2 23 64 85 63 85 0.97

4 32 9.9e-07 0.00022 23.6 2.3 1 23 91 113 91 113 0.98

5 32 0.00011 0.024 17.3 1.4 1 23 119 141 119 141 0.98

6 32 8.2e-05 0.018 17.6 0.9 1 23 147 169 147 169 0.98

7 32 3.8e-06 0.00086 21.8 1.3 1 23 175 198 175 198 0.96

8 32 0.0003 0.068 15.8 0.3 1 23 208 230 208 230 0.95

9 32 2.6e-05 0.0058 19.2 0.1 1 23 237 259 237 259 0.95

10 32 4.3e-06 0.00097 21.6 3.5 1 23 265 287 265 287 0.98

11 32 8.5e-06 0.0019 20.7 0.4 1 21 293 313 293 314 0.95

12 32 0.00019 0.042 16.5 2.2 1 23 368 390 368 390 0.97

13 32 5.1e-05 0.011 18.3 3.5 2 23 397 418 396 418 0.98

14 32 2.2e-05 0.005 19.4 3.4 1 23 424 446 424 446 0.98

15 32 0.0041 0.92 12.3 2.3 1 23 452 474 452 474 0.98

16 32 0.0013 0.29 13.8 0.5 1 23 480 502 480 502 0.96

17 32 0.0013 0.3 13.8 2.1 1 23 508 531 508 531 0.96

18 32 0.00071 0.16 14.6 2.7 1 23 541 563 541 563 0.95

19 32 2.4e-06 0.00053 22.4 0.5 3 23 570 590 569 590 0.99

20 32 0.0003 0.068 15.8 0.6 1 23 596 618 596 618 0.98

21 32 0.00059 0.13 14.9 0.2 1 21 624 644 624 645 0.94

22 32 0.00015 0.034 16.8 1.4 2 23 697 718 696 718 0.96

23 32 5.8e-05 0.013 18.1 3.8 3 23 725 745 724 745 0.98

24 32 0.0017 0.39 13.4 1.0 1 23 751 773 751 773 0.98

25 32 0.00026 0.058 16.0 0.8 1 23 779 801 779 801 0.97

26 32 0.00016 0.035 16.7 1.4 1 23 807 829 807 829 0.97

27 32 0.00012 0.027 17.1 4.4 1 23 835 857 835 858 0.96

28 32 1.3e-05 0.003 20.1 0.3 1 23 868 890 868 890 0.96

29 32 0.00019 0.043 16.4 0.3 1 23 897 919 897 919 0.96

30 32 1.2e-07 2.7e-05 26.5 1.6 1 23 925 947 925 947 0.98

31 32 1.6e-06 0.00035 23.0 2.0 1 23 953 975 953 975 0.98

32 32 4.2e-06 0.00093 21.7 1.1 1 23 981 1003 981 1003 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	5.8	1.3e+03	2.3	0.8	2	23	9	29	9	29	0.88
2	32	8.9e-05	0.02	17.5	1.9	1	23	35	57	35	57	0.97
3	32	0.031	6.9	9.5	1.6	2	23	64	85	63	85	0.97
4	32	9.9e-07	0.00022	23.6	2.3	1	23	91	113	91	113	0.98
5	32	0.00011	0.024	17.3	1.4	1	23	119	141	119	141	0.98
6	32	8.2e-05	0.018	17.6	0.9	1	23	147	169	147	169	0.98
7	32	3.8e-06	0.00086	21.8	1.3	1	23	175	198	175	198	0.96
8	32	0.0003	0.068	15.8	0.3	1	23	208	230	208	230	0.95
9	32	2.6e-05	0.0058	19.2	0.1	1	23	237	259	237	259	0.95
10	32	4.3e-06	0.00097	21.6	3.5	1	23	265	287	265	287	0.98
11	32	8.5e-06	0.0019	20.7	0.4	1	21	293	313	293	314	0.95
12	32	0.00019	0.042	16.5	2.2	1	23	368	390	368	390	0.97
13	32	5.1e-05	0.011	18.3	3.5	2	23	397	418	396	418	0.98
14	32	2.2e-05	0.005	19.4	3.4	1	23	424	446	424	446	0.98
15	32	0.0041	0.92	12.3	2.3	1	23	452	474	452	474	0.98
16	32	0.0013	0.29	13.8	0.5	1	23	480	502	480	502	0.96
17	32	0.0013	0.3	13.8	2.1	1	23	508	531	508	531	0.96
18	32	0.00071	0.16	14.6	2.7	1	23	541	563	541	563	0.95
19	32	2.4e-06	0.00053	22.4	0.5	3	23	570	590	569	590	0.99
20	32	0.0003	0.068	15.8	0.6	1	23	596	618	596	618	0.98
21	32	0.00059	0.13	14.9	0.2	1	21	624	644	624	645	0.94
22	32	0.00015	0.034	16.8	1.4	2	23	697	718	696	718	0.96
23	32	5.8e-05	0.013	18.1	3.8	3	23	725	745	724	745	0.98
24	32	0.0017	0.39	13.4	1.0	1	23	751	773	751	773	0.98
25	32	0.00026	0.058	16.0	0.8	1	23	779	801	779	801	0.97
26	32	0.00016	0.035	16.7	1.4	1	23	807	829	807	829	0.97
27	32	0.00012	0.027	17.1	4.4	1	23	835	857	835	858	0.96
28	32	1.3e-05	0.003	20.1	0.3	1	23	868	890	868	890	0.96
29	32	0.00019	0.043	16.4	0.3	1	23	897	919	897	919	0.96
30	32	1.2e-07	2.7e-05	26.5	1.6	1	23	925	947	925	947	0.98
31	32	1.6e-06	0.00035	23.0	2.0	1	23	953	975	953	975	0.98
32	32	4.2e-06	0.00093	21.7	1.1	1	23	981	1003	981	1003	0.98

Sequence Information

Coding Sequence: ATGAAAGAGGATAAATCATCAGAACAATGTGACTTGTGTGGCGAGACGTTGACGGCCCGACGCATGGTCACTCACAAGAAAAAGCACAGCCTCGTCGGCCCTCACGTTTGCTCGGTCTGTGGGAAGATGTTCAACACCGAGTCGAACCTGTACTTCCACGTCAGGACGCACACCGTCTCGATAGCCATCAAGTGCGGGCTCTGCGACACTGTGTGTCTGTCTGAGAAACTCTTGAGAAGTCACATGAAGACTCACACTAAAGAAAGACCTTACAAATGTGAGATTTGTGATAAAACGTACAAGAGATCCTACGAGCTgcttaaacacaaaaaaatacacACGGGCGTAAAAAACTTCAAGTGTAATATTTGTGACTACGTAACGACTTACAAAGCTTACTTagagattcataaaaaaagacacATGGGTGATTTCAAGTATCACTGTGAAATTTGCGGTAAAGGCTACTACACTAACACGGCGTTAGAAAGTCACAAAAACGTTCACACTGGGGATAAACCATATCAGTGCTCCATCTGTGGCAAATCGTTTATATACAAGTACAACATGATGGCTCATAAAAAACAGCTTCATCCGGATTCCGACTACGGCGTCACGAGCTACGTGTGTCTCATCTGCAACAAGTCGTTTGCTTACAAGAAGTCCCTCCTGCTGCACAATGCGGTTCATTCCGGCGAGAACCAGTCTTTCCTCTGCGACGTCTGCGGGAAAGCTCTGACTAGCAACGCGTCGCTCCAGGCCCACAGACGCATCCACACGGGGGAGAGACCGCATGTGTGCCAGACGTGTAACAAGGCGTTCAGTAAACGTAGTACTCTACGCATTCACCTCCGGACTCATACGGGAGAGAGGCCGTACTATTGTAATGAGTGCGGCAAGACGTTCACCCAGCGGCCGTCGCTTGTTGTTCATAAGAGGTCTATTTCTGTCAACACGCGCCTTAGAAAAAGAAGAACTATCATTCAAACAGATCAGAATAACACCACGAGAAATACGTCGGAACTATCCAAGCGTCTCACTGATTTCGACCGCAAGGAACCAAAACAATCTCGCAAGAAACTCCAAAAAACGAGTGCGTATCATTCGTGCAATGTGTGTGGTAAAGTGTTCAACAACCTTAGCACACTCTCTTTCCATCTGCGTTCGCATACCACGccagaattaataaaatgtgaatattgCGCCAAgactttcaaaaaaaataagCGCCTCAAGAGCCACATGAAGACCCACACGACAGAAAGGCCGTATAAATGTGAGCTCTGTAACAAGACTTATAAGCGCTCGTTTGAGCTGACGAGTCACAAGAGACTTCACGAGGGGGTGAAAAGTTTCAAGTGTGACATGTGCGAGTATGCGACAGTGTACAGGGCTCATCTGGAGAGCCACAAGAAGCGGCACACTGGGGACTTTAAATACCACTGCGAGATCTGCGGAAAAGGATACTACACAAACACTGGACTTGAAGGTCATAAGAACGCTCACAAAGGCGAAAGACCGTACCAGTGCGCAGTGTGCGGTAAGTCCTTCCTCCACAAATACAACATGCTTGCGCACAAGAAACAGCTGCACCCCGACTCGGACCAAATCGTCAAGACGCACGACTGCACCATCTGCCAGAAGAGTTTCAACTACAGGAAGACTCTCCTCTCTCACGTGGCCAGGCACATGGGCCAGAAGTCGCTCTGCGATATTTGCGGCAAAGCGTTTGTGAACAACACGTCGCTGCAGTCTCACCGACGGATGCACACCGGCGAGCGGCCTTTCAGGTGCGAGACATGTGGCAAGACTTTCGGCAAGAGGGCCATCCTGCGTGTTCATGAGCGGACACACACCGGGGAGAAACCGTACTCTTGCGAGGTTTGTGGGAAGTGTTTCGCTCAGCGGCCCCCCTTGGTCATACACAAGAGGTTACCGAGCGAAACTGCATCTGGTCAGACTGCGAGGTCTGACTGGAGTTCATCGATCCTCTCGACAAGACTTGGTTTGAGAGTTATGTGGTCCGGGGTTTCTCTAGCCAAGCAGCAAGAGAACGCGGACGGCGGGTCTCGGAACGGCTCTAAACAGGAGTGTCAATCCTGCAACAAGGCGTTCAACAACAGGACGAAACTAGTGAGGCACTTAAGAGAGCACGAATCCAAAGATAAGATCTGTAAGATATGCGGAAAGACTTTCTTCGGTCACAAAAAGTTGAGGAACCACATGCGGTCGCATTTGAAAGAAAGGCCGTTTGTTTGCGACAGATGCAGTAGGGCGTACAAGACCCAATTCGAGCTTAATGGGCACAAGAAGATACACACTGCAGAAAAGAGTCACGTGTGTGACGTGTGTGGGTATGCCACCATCTACAAGGCCTATTTGAAGGTCCATCAGAAAAGACACATGCGCCAGTTTAGGTTTAACTGCGACATTTGCGGGAAAGGGTACTACACAAACTGTGAGCTGCAGATCCACAAAAATGTCCACACGGGTGAGAAACCGTTCCAATGTGATGCGTGCGGGAAGGCATACATACACAAGCACTATTTGGTCGCTCACCAGCGCTCGCACCATCCGGAACTGCAGGACGACATGACGCCTTACTCATGCGAGATCTGCGGGAAAGTGTTTGCGTACAAAAAGAGTCTGATGATGCACACTAGCGCTCATATGGGGGAGAACCAAACCTACCTCTGCGACCTGTGTGGTAAGGCCATGACGAGCAACGCGTCGCTCAAGATTCACAGGAGGACCCATACAGGGGAGAGGCCGTTTGTGTGCGACTCTTGCGGTAAGAGTTTCAATCGCAGGAATAATTTGCGAATCCACCAGCGGACTCACACCGGGGAGAAACCATATTCGTGTGATCAGTGCGACAAGACTTTCACACAACGCTCGACGTTGGTAATTCACAGGCGGTACCACACGGGGCAGAGGCCTTACGTGTGCCAGCTGTGCGGCAAGGACTTTGTCTCTAAAACGCTGTTGAGGACCCATCAAAAGAGTCACGGACCTTAG
Protein Sequence: MKEDKSSEQCDLCGETLTARRMVTHKKKHSLVGPHVCSVCGKMFNTESNLYFHVRTHTVSIAIKCGLCDTVCLSEKLLRSHMKTHTKERPYKCEICDKTYKRSYELLKHKKIHTGVKNFKCNICDYVTTYKAYLEIHKKRHMGDFKYHCEICGKGYYTNTALESHKNVHTGDKPYQCSICGKSFIYKYNMMAHKKQLHPDSDYGVTSYVCLICNKSFAYKKSLLLHNAVHSGENQSFLCDVCGKALTSNASLQAHRRIHTGERPHVCQTCNKAFSKRSTLRIHLRTHTGERPYYCNECGKTFTQRPSLVVHKRSISVNTRLRKRRTIIQTDQNNTTRNTSELSKRLTDFDRKEPKQSRKKLQKTSAYHSCNVCGKVFNNLSTLSFHLRSHTTPELIKCEYCAKTFKKNKRLKSHMKTHTTERPYKCELCNKTYKRSFELTSHKRLHEGVKSFKCDMCEYATVYRAHLESHKKRHTGDFKYHCEICGKGYYTNTGLEGHKNAHKGERPYQCAVCGKSFLHKYNMLAHKKQLHPDSDQIVKTHDCTICQKSFNYRKTLLSHVARHMGQKSLCDICGKAFVNNTSLQSHRRMHTGERPFRCETCGKTFGKRAILRVHERTHTGEKPYSCEVCGKCFAQRPPLVIHKRLPSETASGQTARSDWSSSILSTRLGLRVMWSGVSLAKQQENADGGSRNGSKQECQSCNKAFNNRTKLVRHLREHESKDKICKICGKTFFGHKKLRNHMRSHLKERPFVCDRCSRAYKTQFELNGHKKIHTAEKSHVCDVCGYATIYKAYLKVHQKRHMRQFRFNCDICGKGYYTNCELQIHKNVHTGEKPFQCDACGKAYIHKHYLVAHQRSHHPELQDDMTPYSCEICGKVFAYKKSLMMHTSAHMGENQTYLCDLCGKAMTSNASLKIHRRTHTGERPFVCDSCGKSFNRRNNLRIHQRTHTGEKPYSCDQCDKTFTQRSTLVIHRRYHTGQRPYVCQLCGKDFVSKTLLRTHQKSHGP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448777;
90% Identity: iTF_01447743; iTF_01448777;
80% Identity: -