Tcri013111.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49683851-49694337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 5.7 8.3e+02 2.2 0.7 2 23 176 196 176 196 0.87 2 27 8.1e-05 0.012 17.5 1.9 1 23 202 224 202 224 0.97 3 27 0.028 4.1 9.5 1.6 2 23 231 252 230 252 0.97 4 27 1.6e-06 0.00024 22.8 2.2 1 23 258 280 258 280 0.98 5 27 9.6e-05 0.014 17.2 1.4 1 23 286 308 286 308 0.98 6 27 2.2 3.2e+02 3.5 0.5 1 13 314 326 314 328 0.88 7 27 0.00058 0.085 14.8 2.7 1 23 382 404 382 404 0.97 8 27 4.6e-05 0.0068 18.2 3.5 2 23 411 432 410 432 0.98 9 27 2e-05 0.003 19.4 3.4 1 23 438 460 438 460 0.98 10 27 0.0037 0.55 12.2 2.3 1 23 466 488 466 488 0.98 11 27 0.0012 0.17 13.8 0.5 1 23 494 516 494 516 0.96 12 27 0.0012 0.18 13.8 2.1 1 23 522 545 522 545 0.96 13 27 0.022 3.2 9.8 3.2 1 23 555 577 555 577 0.92 14 27 2.2e-06 0.00032 22.4 0.5 3 23 584 604 583 604 0.99 15 27 0.00028 0.04 15.8 0.6 1 23 610 632 610 632 0.98 16 27 0.00054 0.079 14.9 0.2 1 21 638 658 638 659 0.94 17 27 0.00014 0.02 16.8 1.4 2 23 711 732 710 732 0.96 18 27 5.3e-05 0.0078 18.0 3.8 3 23 739 759 738 759 0.98 19 27 0.0016 0.23 13.4 1.0 1 23 765 787 765 787 0.98 20 27 0.00024 0.035 16.0 0.8 1 23 793 815 793 815 0.97 21 27 0.00014 0.021 16.7 1.4 1 23 821 843 821 843 0.97 22 27 0.00011 0.016 17.1 4.4 1 23 849 871 849 872 0.96 23 27 1.2e-05 0.0018 20.1 0.3 1 23 882 904 882 904 0.96 24 27 0.00017 0.025 16.4 0.3 1 23 911 933 911 933 0.96 25 27 7.6e-08 1.1e-05 27.0 1.5 1 23 939 961 939 961 0.99 26 27 1.4e-06 0.00021 23.0 2.0 1 23 967 989 967 989 0.98 27 27 3.8e-06 0.00056 21.7 1.1 1 23 995 1017 995 1017 0.98
Sequence Information
- Coding Sequence
- ATGGCAATGAATCTACGAGCCATCCGGTGTGTTTTTAGTGTCACTAACGCTTCAGGAGAGGCAGAATATCACTGGAAGATGAAGAGAGGTCAGGGCGACCTTCCACGAGTACAAACTGGTCTTGGAGATCTGGGGCTCTTCCACTGTTGGGTAATTCAAGGCATGTTGATGGAGTTCCTGACAGACTTGGGCATGGTGCTCCTTTTGTTCGGGGGTCAGAAGCCTAGGCACAAACTTGGCGGCAATGCAGTGCATGTTAAAAATAGACATGAGGATTGTCCGCACTGGTCCGTATTACACATTCACGATGTAGGTCACTCTGACCTCTCTTTGTCTTTCAGTGACGTTCTGCAGCTTCTGAAGTGTGAGTCCCGCTCAAAACACACCAGACAGCTCGTAGCTTCATTGCCATCTAAAAATTGGCAATTTCTCAATGAATGTACGACAAGTATCAAGAAGGAGGAAACGTCTCCCCGAAAGAATTGTGTAGTTGTCCCTTCGAAAGAGGATAAATCGTCGTCAGAACAATGCGACTTGTGCGGAGAGACGTTGACGGCCCGACGCATGGTCTCTCACAAGAAGAAGCACAGCCTCGTCGGCCCTCACGTGTGCTCGGTCTGTGGGAAAATGTTCAACACCGAGTCGAACCTGTACTTCCACGTCAGGACGCACACGGTCTCGATAGCCATCAAGTGCGGGCTCTGCGACACTGTGTGTCTGTCTGAGAAACTCTTGAGAAGTCACATGAAGACCCACACTAAAGAGAGACCTTACAAATGTGAGGTTTGCGATAAAACGTACAAGAGATCCTACGAACTGCTGAAACACAAGAAAATACATACCGGCGTAAAGAACTTCAAGTGTAACATATGTGACTATGTAACAACCTACAAAGCTTACTTagagattcataaaaaaagacACATGGGTGATTTCAAGTATCACTGTGAAATTTGCAGTAAAGGCTACTACACTAACACGGCgtCTATTTCTGTCAACACGCGCCTTAGAAAACGAACTATAATTCAAACAGATCAGAATAACACCTCGAGCAATACATCGGAACTATCCAAGCGTCTCGCTGATGTCGACCGCAAGGAACCAAAACAATCTTGCAAGAAACTGCAAAAAACGAGCACGTACCATTCGTGCGATATGTGTGGTAAAATGTTCAACAACCTTAGCACACTCTCTTTCCATCTGCGTTCGCATACCACGccagaattaataaaatgtgaatattgcGCCAAgactttcaaaaaaaataagCGCCTCAAGAGCCACATGAAGACCCACACGACGGAAAGGCCATATAAATGTGAGCTGTGTAACAAGACTTATAAGCGCTCGTTTGAGCTGACGAGTCACAAGAGACTTCATGAGGGGGTGAAAAATTTCAAGTGTGACATGTGTGAGTATGCCACGGTGTACAGGGCACATCTGGAGAGCCACAAGAAGCGACACACCGGGGACTTTAAATACCACTGCGAGATCTGCGGAAAAGGGTATTACACAAACACGGGACTTGAAGGTCATAAGAACGCTCATAAAGGTGAGAGACCGTATCAGTGCGCAGTTTGCGGTAAGTCCTTCCTCCACAAATACAACATGCTTGCGCACAAGAAACAGCTGCATCCCGACTCGGACCAGGTTGTCAAGACATACGACTGCAACATCTGTCAGAAGAGTTTCAACTACAGGAAGACTCTCCTCTGTCACGTCGCCAGACACATGGGCCAGAAGTCGCTCTGCGATATCTGCGGCAAGGCGTTTGTGAACAACACGTCGCTGCAGTCTCACCGACGGATGCACACGGGTGAGCGGCCTTTCAGGTGCGAGACTTGTGGCAAGACCTTTGGCAAGAGGGCTATTCTGCGCGTTCACGAGCGGACACACACTGGAGAAAAACCGTACTCGTGTGAGGTTTGTGGGAAGTGTTTCGCTCAGCGTCCCCCCTTGGTCATACACAAGAGGTTATCGAGCGAAACTGCATCTGGTCAGACTGCGAGGTCTGACTGGAGTTCATCAATCCTCTCGACGAGACTTGGTTTGAGAGTTATGTGGTCCGGGGTTTCTCTAGTCAAGCAGCAAGAGAACGCAGACGGCAGGTCTCAGAACGGCTCTAAGCAGGAATGTCAGTCCTGCAACAAGGCGTTCAACAACAGGACGAAACTAGTGAGGCACTTACGAGAGCATGAATCCAAAGATAAGATCTGTAAGATATGCGGAAAGACTTTCTTCGGTCACAAAAAGTTGAGGAACCACATGCGGTCTCATTTGAAAGAAAGACCGTTTGTTTGTGACAGATGCAGTAGGGCGTACAAGACCCAATTTGAGCTTAATGGCCACAAGAAGATACACACTGCGGAGAAGAGTCATGTGTGTGATGTGTGCGGGTATGCCACCATATACAAGGCCTATTTGAAGGTCCACCAGAAAAGACACATGCGCCAGTTTAGGTTTAACTGCGACATTTGCGGGAAAGGGTACTACACAAACTGTGAGCTGCAGATCCATAAAAACGTCCACACGGGTGAGAAACCGTTCCAATGTGATGCTTGCGGGAAGGCGTACATACACAAGCACTATTTGGTCGCTCACCAGCGCTCGCACCATCCAGAACTGCAGGACAACATGACACCTTACTCATGCGAAATCTGTGGGAAAGTGTTTGCGTACAAAAAGAGTCTGATGATGCACACTAGCGCTCATATGGGGGAGAACCAAACCTACCTCTGCGACCTGTGTGGCAAGGCTATGACGAGTAATGCGTCGCTCAAAATTCACAGAAGGACCCACACGGGAGAGAGGCCGTACGTGTGCGACTCATGCGGCAAGAGTTTCAATCGCAGGAATAATTTGCGAATCCACCAACGGACTCATACCGGCGAGAAACCATATTCGTGTGATCAGTGTGACAAGACTTTCACACAACGCTCGACGTTGGTGATTCACAGGCGGTATCACACGGGGCAGAGGCCGTACGTGTGTCAGTTGTGTGGCAAGGACTTTGTCTCTAAAACGCTGTTAAGGACCCATCAAAAGAGTCACGGACTTTAG
- Protein Sequence
- MAMNLRAIRCVFSVTNASGEAEYHWKMKRGQGDLPRVQTGLGDLGLFHCWVIQGMLMEFLTDLGMVLLLFGGQKPRHKLGGNAVHVKNRHEDCPHWSVLHIHDVGHSDLSLSFSDVLQLLKCESRSKHTRQLVASLPSKNWQFLNECTTSIKKEETSPRKNCVVVPSKEDKSSSEQCDLCGETLTARRMVSHKKKHSLVGPHVCSVCGKMFNTESNLYFHVRTHTVSIAIKCGLCDTVCLSEKLLRSHMKTHTKERPYKCEVCDKTYKRSYELLKHKKIHTGVKNFKCNICDYVTTYKAYLEIHKKRHMGDFKYHCEICSKGYYTNTASISVNTRLRKRTIIQTDQNNTSSNTSELSKRLADVDRKEPKQSCKKLQKTSTYHSCDMCGKMFNNLSTLSFHLRSHTTPELIKCEYCAKTFKKNKRLKSHMKTHTTERPYKCELCNKTYKRSFELTSHKRLHEGVKNFKCDMCEYATVYRAHLESHKKRHTGDFKYHCEICGKGYYTNTGLEGHKNAHKGERPYQCAVCGKSFLHKYNMLAHKKQLHPDSDQVVKTYDCNICQKSFNYRKTLLCHVARHMGQKSLCDICGKAFVNNTSLQSHRRMHTGERPFRCETCGKTFGKRAILRVHERTHTGEKPYSCEVCGKCFAQRPPLVIHKRLSSETASGQTARSDWSSSILSTRLGLRVMWSGVSLVKQQENADGRSQNGSKQECQSCNKAFNNRTKLVRHLREHESKDKICKICGKTFFGHKKLRNHMRSHLKERPFVCDRCSRAYKTQFELNGHKKIHTAEKSHVCDVCGYATIYKAYLKVHQKRHMRQFRFNCDICGKGYYTNCELQIHKNVHTGEKPFQCDACGKAYIHKHYLVAHQRSHHPELQDNMTPYSCEICGKVFAYKKSLMMHTSAHMGENQTYLCDLCGKAMTSNASLKIHRRTHTGERPYVCDSCGKSFNRRNNLRIHQRTHTGEKPYSCDQCDKTFTQRSTLVIHRRYHTGQRPYVCQLCGKDFVSKTLLRTHQKSHGL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448777;
- 90% Identity
- -
- 80% Identity
- -