Tgen034563.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010003406.1:62063-70086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.7e-05 0.011 18.1 0.7 3 23 2 22 1 22 0.94 2 17 0.0042 0.79 12.3 1.2 2 23 56 77 55 77 0.96 3 17 0.00029 0.054 15.9 0.1 1 20 85 104 85 106 0.94 4 17 9.3e-05 0.017 17.5 0.4 1 23 114 136 114 136 0.94 5 17 0.0012 0.23 14.0 1.7 1 23 142 164 142 164 0.95 6 17 0.00022 0.041 16.3 0.6 1 19 170 188 170 192 0.95 7 17 0.023 4.4 9.9 1.4 1 23 198 220 198 220 0.98 8 17 0.61 1.1e+02 5.5 0.1 7 23 508 524 508 524 0.95 9 17 0.0078 1.5 11.4 4.5 1 23 569 591 569 591 0.95 10 17 1.3 2.4e+02 4.5 3.9 3 23 601 621 600 621 0.95 11 17 0.00031 0.058 15.8 2.2 1 23 627 650 627 650 0.97 12 17 1.3e-05 0.0025 20.1 2.5 1 23 654 677 654 677 0.95 13 17 1.1e-05 0.0021 20.3 0.2 1 20 685 704 685 706 0.94 14 17 0.0043 0.8 12.2 0.4 1 23 714 736 714 736 0.93 15 17 0.0021 0.4 13.2 1.8 1 23 742 764 742 764 0.95 16 17 2e-05 0.0038 19.6 0.4 1 23 770 792 770 792 0.95 17 17 0.016 3.1 10.4 1.8 1 23 798 820 798 820 0.98
Sequence Information
- Coding Sequence
- ATGTGTAATATATGCGGTAAGAAATACAAGAAAAGCGGTAGTTTGACTAAACATGCCCTGGAACACGAAGGTAAGGGGCAGTTCAAATGCAGGCTGTGCAGGGAGATTTTTCTGACGGATTGTGAGCGCGCCAAACACCGGGAAAAGGTCCACGAAAAACCGTGGAAATGTGACTTGTGCCCTCACACGTTCATGTCCAAGGACAAACTGGATCAGCATGTCAAATGGCATGTAAATAAGGAGAGTGAAGTGTTTGTCTGCAACATATGCTCGAAAGAATTCAAGCTCAAAGTCAACCTTAAGaTCCACGTGGAAAGTCGTTGCGGCACAGACCCTCAGCACGCATGCAAGGATTGTGGGAAGGCGTTCATGACACGTGGCACTCTCATTACCCACGCTCTCCTTCACACGGGCGAGAAAACGTTCCTCTGCCGGTTCTGCGGGAAGAGCTATCGTCTCAAGGTGGAGATGCAGCGCCATGAGCGCTCACACACGGGAGAGAAGCCGTTTGTCTGCAAAGTGTGCGGTAAGGCGTTCGCGCATCGGGAGAGCCTCGTCACCCATGATACGTTGCACACAGGTATTCGGCCGTACATGTGCGAAGCTTGTGGATCTACCTTCTCCTGTATCGGTAACCTCATCAAGCACAGGAAGACCCACCGTAACAAGTGCGGCCAAAATGCTGTGACTGGCGTTAACAAGACGGATAAAGAAAGGAGGTCTGGTGCCTCCACCTCAAACTTGCATCTCCCCGAGAAACCCAAGGTCTCTCTCGAGAAGGTCTTTCAAAAATCTACCCTCACACCTGCGACGGTCCAGAGATCTGGCGAGCTGCCCGCACCTCCGGCTGTTGGTTACTACAACAGCTACAAGCAGCAGCCGCCTTACGAGGAGAACCACCATTGGGTCACTCCACAGTCCATGTGCAACGAGGTGGCAAATGAAAGACTTCATCCTTCCACGGAGCTACATGGGGTCACAGAGTCAAGTAGGAAGAGttCACATCTCTATTGGGGCAGCAGCAGCAGTATTATTAGCACCCACCAAGAGTCGGCGCAGCACCCGTATGGACCCTACAATAACGCTGCCCCCAAGGACATGGGCCATGATATGGTCCAAGCCCGTATTTTCTACCCAGCTGCCTCAGAAGTACACAAACCAGCGGGGAACTTTTACCAAAACTTGGATGCAGACAAACCTCCGTACTATCACAGGTTTCATGACCCTGAGAACGATAAGCTGCCTTACAGTTACAAAATCCACAACATGGATAATGaCCAAACAGCAGACCAAGAAGTTGGGAATGATGATGCAAGCTCAGTGAAGAAACCTATCCGTGAACGGAAGCAAAAATTCCCAGTGAAATGTAATGTCATACTTAAATCGGAGAATATTGAAGAGTTATCTAAGGgaaatttaaatgctttacCTTGCAAACAAAATGATTCTTTAAAACCACATCAAAGTAATTTGTGTAAATTAGAGGAAACAATACTAGACAGTTTTTCTAGTtgccaatttgataaaaagtttgATTCTAAACAAGATCTGCAAGAACATGTGTTGGTTCACACTACCTCAAGTGGCATGACAAATGACATTCAGCAAGTAAATGATTCGGTTTCCGAAGATGACGAATCTTTAGACAAGAGGTTGAGTCAGTATTTATTCAAGACTGGTGGAGATTCAGTCCCAAATAAAAAGTTCCTTTGTCAGTATTGCAACAAAGAATTCAGTTTTATATCGCGGCTAAACCACCACCGGAAACTACACGTTGAAGAAGAAAAGGAAACTCCCTTGTGCCGGTTCTGTGGTAAAAAATACCTCAACAAAGCGTGTTTGAGAAAACACGAATCTCAACATAAAGGTGCCGGAGTTTATCAATGTCGAGAGTGCAAAGAAGGATTCGAAAGTAAGTCAGATTATCGGCAGCATAGATTAAAACGGCATGGGAGGGAACACGTTTGCTTGAGGTGCCAGCGCACATTCTCCAATGCCAGTAATTTGAGGATCCATATGAACAACAAACACACGGATCACACGCCCGAATCCTACGCATGCCAGCTATGCggtaaacaatttaaacaaaagggTAATCTAAAAGTCCACCTTGACAGCCGTTGCGGTTCTGAGCCACGCCACGCTTGCTCTGTCTGCGGTAAGGCCTTTATGAGCGTTGGATCACTCAGCACGCACTTCCTCCTCCACACAGGTGAAAAAACTTTCCTATGCCGGTTCTGCGGGAAGAATTACCGCCTCAAGGTGGAGATGCAGCGCCACGAACGTACGCACACAGGAGAGAAGCCGTTTGTCTGTAAAGTGTGTGGTAAGGCGTTCGCGCATCGGGAGAGTCTCATCACCCACGCCACACTTCATACAGGGTTAAGACCGTACATGTGCGAGTCTTGCGGGTCTACTTTCTCATGTATAGGTAATTTGATAAAACACAGACAGACCCATAATAGACGTTGCCAAATAGCTGCAAGATGA
- Protein Sequence
- MCNICGKKYKKSGSLTKHALEHEGKGQFKCRLCREIFLTDCERAKHREKVHEKPWKCDLCPHTFMSKDKLDQHVKWHVNKESEVFVCNICSKEFKLKVNLKIHVESRCGTDPQHACKDCGKAFMTRGTLITHALLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCGKAFAHRESLVTHDTLHTGIRPYMCEACGSTFSCIGNLIKHRKTHRNKCGQNAVTGVNKTDKERRSGASTSNLHLPEKPKVSLEKVFQKSTLTPATVQRSGELPAPPAVGYYNSYKQQPPYEENHHWVTPQSMCNEVANERLHPSTELHGVTESSRKSSHLYWGSSSSIISTHQESAQHPYGPYNNAAPKDMGHDMVQARIFYPAASEVHKPAGNFYQNLDADKPPYYHRFHDPENDKLPYSYKIHNMDNDQTADQEVGNDDASSVKKPIRERKQKFPVKCNVILKSENIEELSKGNLNALPCKQNDSLKPHQSNLCKLEETILDSFSSCQFDKKFDSKQDLQEHVLVHTTSSGMTNDIQQVNDSVSEDDESLDKRLSQYLFKTGGDSVPNKKFLCQYCNKEFSFISRLNHHRKLHVEEEKETPLCRFCGKKYLNKACLRKHESQHKGAGVYQCRECKEGFESKSDYRQHRLKRHGREHVCLRCQRTFSNASNLRIHMNNKHTDHTPESYACQLCGKQFKQKGNLKVHLDSRCGSEPRHACSVCGKAFMSVGSLSTHFLLHTGEKTFLCRFCGKNYRLKVEMQRHERTHTGEKPFVCKVCGKAFAHRESLITHATLHTGLRPYMCESCGSTFSCIGNLIKHRQTHNRRCQIAAR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445031;
- 90% Identity
- iTF_01449837; iTF_01450818; iTF_01445031; iTF_01448828;
- 80% Identity
- -