Tbar023174.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema bartmani
Gene Symbol
-
Assembly
GCA_902151455.1
Location
CABFWB010001771.1:131714-140677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00029 0.066 15.9 0.3 2 23 15 36 14 36 0.94
2 16 0.0041 0.93 12.2 1.2 2 23 70 91 69 91 0.96
3 16 0.00029 0.064 15.9 0.1 1 20 99 118 99 120 0.94
4 16 9.2e-05 0.021 17.4 0.4 1 23 128 150 128 150 0.94
5 16 0.0012 0.27 13.9 1.7 1 23 156 178 156 178 0.95
6 16 9.5e-05 0.021 17.4 0.9 1 19 184 202 184 206 0.96
7 16 0.023 5.2 9.9 1.4 1 23 212 234 212 234 0.98
8 16 0.0077 1.7 11.4 4.5 1 23 580 602 580 602 0.95
9 16 1.2 2.8e+02 4.4 3.9 3 23 612 632 611 632 0.95
10 16 0.00031 0.069 15.8 2.2 1 23 638 661 638 661 0.97
11 16 1.3e-05 0.003 20.1 2.5 1 23 665 688 665 688 0.95
12 16 1.1e-05 0.0025 20.3 0.2 1 20 696 715 696 717 0.94
13 16 0.0042 0.95 12.2 0.4 1 23 725 747 725 747 0.93
14 16 0.0021 0.47 13.2 1.8 1 23 753 775 753 775 0.95
15 16 2e-05 0.0044 19.5 0.4 1 23 781 803 781 803 0.95
16 16 0.016 3.6 10.4 1.8 1 23 809 831 809 831 0.98

Sequence Information

Coding Sequence
ATGGAAAGCCACAAAGACAAGACTGACGCCAAAAACTCTTTGATGTGTAATATATGCGGTAAGAAATACAAGAAAATCGGTAGTTTGACTAAACATGCCCTGGAACACGAAGGTAAGGGGCAGTTCAAATGCAGGCTGTGCAGGGAGATTTTTCTGACGGATTGTGAGCGCACCAAACACCGGGAAAAGGTCCATGAAAAACCGTGGAAATGTGACTTGTGCCCTCACACGTTCATGTCCAAGGACAAACTGGATCAGCATGTCAAATGGCATGTAAATAAGGAGAGTGAAGTGTTTGTCTGCAACATATGCTCGAAAGAATTCAAGCTCAAAGTCAACCTTAAGaTCCACGTGGAAAGTCGGTGCGGCACAGACCCTCAGCACGCATGCAAGGATTGTGGGAAGGCGTTCATGACACGTGGCACTCTCATTACCCACGCTCTCCTTCACACGGGTGAGAAAACGTTCCTCTGCCGGTTCTGCGGGAAGAGCTATCGTCTCAAGGTGGAGATGCAGCGCCATGAGCGCTCACACACGGGCGAGAAGCCGTTTGTCTGCAAAGTGTGCGGTAAGGCGTTCTCTCATCGGGAGAGCCTCGTCACCCATGATACGTTGCACACAGGTATTCGGCCGTACATGTGCGAAGCTTGTGGATCTACCTTCTCATGTATCGGTAACCTCATCAAGCACAGGAAGACCCACCGTAACAAGTGCGGCCAAAATGCTGTGACTGGCGTTAACAAGACGGATAAAGAAAGGAGGTCTGGTGCCTCCACCTCAAACTTGCATCTCCCCGAGAAACCCAAGGTCTCTCTCGAGAAGGTATTTCAAAAATCTACCCTCACACCTGCGACGCTCCAGAGATCTAGCGAGCTGCCCGCACCTCCGGCTGTTGGTTACTACAACAGCTACAAGCAGCCGCCTTACGAGGAGAACCACCATTGGGTCACTCCACTGTCCATGTGCAACGAGGTGGCAAATGAAAGACTTCATCCTTCCACGGAGCTACATGGGGTCACAGAGTTAAGTAGGAAGAGttCAAATCTCTATTGGGGCAGCAGCAGTATTATTAGCACCCACCAAGAGTCGGCGCAGCACCCGTATGGACCCTACAATAACGCTGCCCCCAAGGACATGTGCTATGATATGGTCCAAGCCCGTATTTTCTACCCGGCTGCCTCAGAAGTACACAAACCAGCGGGGAACTGTTACCAAAACTTGGATGCAGACAAACCTCCGTACTATCACAGGTTTCATGACCCTGAGAACGATAAGCTGCCTTACAGTTACAAAATCCATAACATGGATAATGaCCAAACAGCAGACCAAGAAGTTGGGAATGATGATGCAAGCTCAGTGAAGAAACCAATCCGTGAACGGAAGCAAAAATTCCCTGTGAAATGTAATGTCATACTTAAATCGGAGAATATTGAGGCGTTATCTAAGGgaaatttaaatgctttacCTTGCAAACAAAATGATTCTTTAAAGCCACATCAAAGTAATTTGTCTAAATTAGAGGAAACAATACTAGACAGTTTTTCTAGTTGCCAATTTGATAGAAAGTTTGATTCTATACTAGATCTGCAAGAACatgtgttggttcacactaCCTCAAGTGGCATGACAAATGACATTCAGCAAGTAAACTCGGTTTCCGAAGATGACGAATCTTTAGACAAGAGGTTGAGTCAGTATTTATTCAAGACTGGTGGAGATTCAGTCCCAAATAAAAAGTTCCTTTGTCAGTATTGCAACAAAGAATTCAGTTTTATATCGCGGCTAAACCACCACCGGAAACTACACGTTGAAGAAGAAAAGGAAACTCCCTTGTGCCGGTTCTGTGGTAAAAAATACCTCAACAAAGCGTGTCTGAGAAAACACGAATCTCAACATAAAGGTGCCGGAGTTTATCAATGTCGAGAGTGCAAAGAAGGATTCGAAAGTAAGTCAGATTATCGGCAGCATAGATTAAAACGGCATGGTAGGGAACACGTTTGTTTGAGATGTCAGCGCACATTCTCCAATGCCAGTAATTTGAGGATCCATATGAACAACAAACACACGGATCAAACGCCCGAATCCTACGCCTGCCAGCTATGCggtaaacaatttaaacaaaagggTAATCTAAAAGTCCACCTTGACAGCCGTTGTGGTTCTGAGCCACGCCACGCTTGCTCTGTCTGCGGTAAGGCCTTTATGAGCGTCGGATCACTCAGCACACACTTCCTCCTCCACACAGGTGAAAAAACTTTCCTATGCCGGTTCTGCGGGAAGAATTACCGCCTTAAGGTGGAGATGCAGCGCCACGAGCGTACACACACAGGAGAGAAGCCGTTTGTCTGTAAAGTGTGTGGTAAGGCGTTCGCGCATCGGGAGAGTCTCATCACCCACGCCACACTTCATACAGGGTTAAGACCGTACATGTGCGAGTCTTGCGGGTCTACTTTCTCATGTATAGGTAATTTGATAAAACACAGACAGACCCATAATAGACGTTGCCAAATAGCTGCAAGATGA
Protein Sequence
MESHKDKTDAKNSLMCNICGKKYKKIGSLTKHALEHEGKGQFKCRLCREIFLTDCERTKHREKVHEKPWKCDLCPHTFMSKDKLDQHVKWHVNKESEVFVCNICSKEFKLKVNLKIHVESRCGTDPQHACKDCGKAFMTRGTLITHALLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCGKAFSHRESLVTHDTLHTGIRPYMCEACGSTFSCIGNLIKHRKTHRNKCGQNAVTGVNKTDKERRSGASTSNLHLPEKPKVSLEKVFQKSTLTPATLQRSSELPAPPAVGYYNSYKQPPYEENHHWVTPLSMCNEVANERLHPSTELHGVTELSRKSSNLYWGSSSIISTHQESAQHPYGPYNNAAPKDMCYDMVQARIFYPAASEVHKPAGNCYQNLDADKPPYYHRFHDPENDKLPYSYKIHNMDNDQTADQEVGNDDASSVKKPIRERKQKFPVKCNVILKSENIEALSKGNLNALPCKQNDSLKPHQSNLSKLEETILDSFSSCQFDRKFDSILDLQEHVLVHTTSSGMTNDIQQVNSVSEDDESLDKRLSQYLFKTGGDSVPNKKFLCQYCNKEFSFISRLNHHRKLHVEEEKETPLCRFCGKKYLNKACLRKHESQHKGAGVYQCRECKEGFESKSDYRQHRLKRHGREHVCLRCQRTFSNASNLRIHMNNKHTDQTPESYACQLCGKQFKQKGNLKVHLDSRCGSEPRHACSVCGKAFMSVGSLSTHFLLHTGEKTFLCRFCGKNYRLKVEMQRHERTHTGEKPFVCKVCGKAFAHRESLITHATLHTGLRPYMCESCGSTFSCIGNLIKHRQTHNRRCQIAAR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01450818; iTF_01447784; iTF_01449837; iTF_01448828;
90% Identity
iTF_01447784;
80% Identity
-