Tpod012146.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000003.1:55537049-55545604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00026 0.05 15.9 0.3 2 23 15 36 14 36 0.94 2 17 0.0022 0.43 12.9 1.5 2 23 70 91 69 91 0.96 3 17 0.00025 0.049 15.9 0.1 1 20 99 118 99 120 0.94 4 17 8.1e-05 0.016 17.4 0.4 1 23 128 150 128 150 0.94 5 17 0.001 0.2 13.9 1.7 1 23 156 178 156 178 0.95 6 17 8.4e-05 0.016 17.4 0.9 1 19 184 202 184 206 0.96 7 17 0.02 3.9 9.9 1.4 1 23 212 234 212 234 0.98 8 17 0.53 1e+02 5.4 0.1 7 23 522 538 522 538 0.95 9 17 0.0028 0.54 12.6 4.2 1 23 583 605 583 605 0.95 10 17 1.1 2.1e+02 4.4 3.9 3 23 615 635 614 635 0.95 11 17 0.00027 0.052 15.8 2.2 1 23 641 664 641 664 0.97 12 17 1.2e-05 0.0022 20.1 2.5 1 23 668 691 668 691 0.95 13 17 9.9e-06 0.0019 20.3 0.2 1 20 699 718 699 720 0.94 14 17 0.0037 0.72 12.2 0.4 1 23 728 750 728 750 0.93 15 17 0.0019 0.36 13.2 1.8 1 23 756 778 756 778 0.95 16 17 1.7e-05 0.0034 19.5 0.4 1 23 784 806 784 806 0.95 17 17 0.014 2.8 10.4 1.8 1 23 812 834 812 834 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGCCACAAAGACAAGACTGACGCCAAAAACTctttaatgtgtaatatatgCGGTAAGAAATACAAGAAAATCGGTAGTTTGACTAAACATGCCCTGGAACACGAAGGTAAGGGTCAGTTCAAATGCAGGCTGTGCAGGGAGATTTTTCTGACTGATTGTGAGCGCACCAAACACCGGGAAAAGGTCCATGAAAAACCGTGGAAATGTGACTTGTGCCCACACACGTTCATGTCCAAGGACAAACTGTATCAGCATGTCAAATGGCATGTAAATAAGGAGAGTGAAGTGTTTGTCTGCAACATATGCTCGAAAGAATTCAAGCTCAAAGTCAACCTTAAGATCCACGTGGAAAGTCGGTGCGGCACAGACCCTCAGCACGCATGCAAGGATTGTGGGAAGGCGTTCATGACACGTGGCACTCTCATTACCCACGCTCTCCTTCACACGGGCGAGAAAACGTTCCTCTGCCGGTTCTGCGGGAAGAGCTATCGTCTCAAGGTGGAGATGCAGCGCCATGAGCGCTCACACACGGGCGAGAAGCCGTTTGTCTGCAAAGTGTGCGGTAAGGCGTTCTCTCATCGGGAGAGCCTCGTCACCCATGATACGTTGCACACAGGTATTCGGCCATACATGTGCGAAGCTTGTGGATCTACCTTCTCCTGTATCGGTAACCTCATCAAGCACAGGAAGACCCACCGTAACAAGTGCGGCCAGAATGCTGTGACTGGCGTTAACAAGACGGATAAAGAAAGGAGGTCTGGTGCCTCCACCTCAAACTTGCATCTCCCCGAGAAACCCAAGGTCTCTCTCGAGAAGGTCTTTCAAAAATCTACCCTCCCACCTGCGACGGTCCAGAGATCTAGCGAGCTGCCCGCACCTCCGGCTGTTGGTTACTACAACAGCTACAAGCAGCAGCCGCCTTACGAGGAGAACCACCATTGGGTCACTCCACAGTCCATGTGCAACGAGGTGGCAAATGAAAGACTTCATCCTTCCACGGAGCTACATGGGGTCACAGAGTCAAGTAGGAAGAGttCACATCTCTATTGGGGCAGCAGCAGCAGTATTATTAGCACCCACCAAGAGTCGGCGCAGCACCCGTATGGACCCTACAATAACGCTGCCCCCAAGGACATGGGCCATGATATGGTCCAAGCCCGTATTTTCTACCCGGCTGCCTCAGAAGTACACAAACCAGCGGGGAACTTTTACCAAAACTTGGATGCAGACAAACCTCCGTACTATCACAGGTTTCATGACCCTGAGAACGATAAGCTGCCTTACAGTTACAAAATCCACAACATGGATAATGaCCAAACAGCAGACCAAGAAGTTGGGAATGATGATGCAAGCTCAGTGAAGAAACCTATCCGTGAACGGAAGCAAAAATTCCCGGTGAAATGTAATGTCATACTTAAATCGGAGAATATTGAGGAGTTATCTAAGGGAAATTTAAATGCTTTACCTTGCAAACAAAATGATTCTTTAAAACCACATCAAAGTAATTTGTGTAAATTAGAGGAAACAATACTAGACAGTTTTTCTAGttgccaatttgataaaaagttTGATTCTAAACAAGATCTGCAAGAACATGTGTTGGTTCACACTACCTCAAGTGACATGACAAATGACATTCAGCAAGTAAATGATTCGGTTTCCGAAGATGACGAATCTTTAGACAAGAGGTTGAGTCAGTATTTATTCAAGACTGGTGGAGATTCAGTCCCAAATAAAAAGTTCCTTTGTCAGTATTGCAACAAAGAATTCAGTTTTATATCGCGGCTAAACCACCACCGGAAAATACACGTTGAAGAAGAAAAGGAAACTCCCTTGTGCCGGTTCTGTGGTAAAAAATACCTCAACAAAGCATGTCTGAGAAAACACGAATCTCAACATAAAGGTGCCGGAGTTTATCAATGTCGAGAGTGCAAAGAAGGATTCGAAAGTAAGTCAGATTATCGGCAGCATAGATTAAAACGGCATGGGAGGGAACACGTTTGCTTGAGGTGCCAGCGCACATTCTCCAATGCGAGTAATTTGAGGATCCATATGAACAACAAACACACGGATCACACGCCCGAATCCTACGCATGCCAGCTATGCGgtaaacaatttaaacaaaagggTAATCTAAAAGTCCACCTGGACAGCCGTTGCGGTTCTGAGCCACGCCACGCTTGCTCTGTCTGCGGTAAGGCCTTTATGAGCGTAGGATCCCTCAGCACACACTTCCTCCTCCACACAGGTGAAAAAACTTTCCTGTGCCGGTTCTGCGGGAAGAATTACCGCCTCAAGGTGGAGATGCAGCGCCACGAGCGTACGCACACAGGAGAGAAGCCGTTTGTCTGCAAAGTGTGTGGTAAGGCGTTCGCGCATCGGGAGAGTCTCATCACCCACGCCACACTTCATACAGGGTTAAGACCGTACATGTGCGAGTCTTGCGGGTCTACTTTCTCATGTATAGGTAATTTGATAAAACACAGACAGACCCATAATAGACGTTGCCAAATAGCTGCAAGATGA
- Protein Sequence
- MESHKDKTDAKNSLMCNICGKKYKKIGSLTKHALEHEGKGQFKCRLCREIFLTDCERTKHREKVHEKPWKCDLCPHTFMSKDKLYQHVKWHVNKESEVFVCNICSKEFKLKVNLKIHVESRCGTDPQHACKDCGKAFMTRGTLITHALLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCGKAFSHRESLVTHDTLHTGIRPYMCEACGSTFSCIGNLIKHRKTHRNKCGQNAVTGVNKTDKERRSGASTSNLHLPEKPKVSLEKVFQKSTLPPATVQRSSELPAPPAVGYYNSYKQQPPYEENHHWVTPQSMCNEVANERLHPSTELHGVTESSRKSSHLYWGSSSSIISTHQESAQHPYGPYNNAAPKDMGHDMVQARIFYPAASEVHKPAGNFYQNLDADKPPYYHRFHDPENDKLPYSYKIHNMDNDQTADQEVGNDDASSVKKPIRERKQKFPVKCNVILKSENIEELSKGNLNALPCKQNDSLKPHQSNLCKLEETILDSFSSCQFDKKFDSKQDLQEHVLVHTTSSDMTNDIQQVNDSVSEDDESLDKRLSQYLFKTGGDSVPNKKFLCQYCNKEFSFISRLNHHRKIHVEEEKETPLCRFCGKKYLNKACLRKHESQHKGAGVYQCRECKEGFESKSDYRQHRLKRHGREHVCLRCQRTFSNASNLRIHMNNKHTDHTPESYACQLCGKQFKQKGNLKVHLDSRCGSEPRHACSVCGKAFMSVGSLSTHFLLHTGEKTFLCRFCGKNYRLKVEMQRHERTHTGEKPFVCKVCGKAFAHRESLITHATLHTGLRPYMCESCGSTFSCIGNLIKHRQTHNRRCQIAAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445031;
- 90% Identity
- iTF_01447784;
- 80% Identity
- -