Tbar021135.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010001537.1:7118-12448[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.37 13.5 2.4 1 23 161 183 161 183 0.98 2 12 5.3e-05 0.012 18.2 0.3 1 23 189 211 189 211 0.96 3 12 0.00022 0.051 16.2 2.0 1 23 217 239 217 239 0.94 4 12 1.1e-05 0.0025 20.3 1.4 1 23 245 267 245 267 0.99 5 12 0.00016 0.036 16.7 0.2 1 23 273 297 273 297 0.91 6 12 4.1e-05 0.0092 18.5 2.3 1 23 303 325 303 325 0.98 7 12 3.9e-06 0.00087 21.8 1.5 1 23 330 353 330 353 0.97 8 12 0.00072 0.16 14.6 0.2 1 23 362 385 362 385 0.96 9 12 3.7e-05 0.0083 18.7 0.3 3 23 393 413 391 413 0.98 10 12 1.9e-05 0.0042 19.6 0.2 1 23 419 441 419 441 0.97 11 12 1.1e-05 0.0025 20.3 2.5 1 23 449 471 449 471 0.95 12 12 0.0046 1 12.1 1.9 1 23 477 499 477 499 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACTCCTTGGATTctcaacttccggttaaaaaCGAATTTGCCGAAGATTTTATGTACGTTGAACCAGATTTGGGGCcctttataaatgtgaaagagGAAAGGGCAGAGGACGAATCAGAAGAGAGCTTGAGTGAACCAACAGAAAGGGGTGAGGATGAAAACAGGGCTGGCATTTCTGAAGAAGCCCTCTTTCTGACGGACGAGAAGTTGAGGAAGCTGTGTTTGGAAGACATCATCAAACATAATCACCTGTTGACAGGCTCCGAGGCAACAAACTTGTGGAAAATAAGGGCTTCCTTGCAGAAGAAAATGAAGAAGCTTGAAGCGAAGAGGAACATCGCGGACAAAGAAACAACGTTTGAACAgaataacaaaagaaaattgCGTAAGTCTGTTAAAGCTATGAAAGTAAGATTAAAAGTTAAAGACCGCGAGGTCAAGAAAAGGTCCCAAGACGTGTCTACGAAAGACCTATTTAACTGTGTGCACTGCAATGACACCTTTGACACGTCTTTTGAACTGCGCGGACATTTGCGAACGCACGCTCCCGCCAAATGTTTCCCGTGCCCAGAGTGCGACCTGTCATTTACTCTGAAGAAGTCCCTGAAAGATCATTCGCTGGTCCACGCTGACAAGTATGTGTTTAACTGCGTGACCTGTCAGAAACCGTTCAGCAACAAGCAGACCCTGCGACGGCACTCATATATCCACCTCGACGTGAAGCCCTTCAAGTGCTCCGAGTGTCAGCGCGCCTTCGCAGACCACGGGGTCCTCAGACGACACCTGAACACTCACTTTGGTATCAAACCTTACAAGTGTCTGGATGAGGCCTGTGGTAAAAGCTTTGGTCGCAAGAGTGACCTGAAGGAGCACTCGCTCATCCACACCGACGAGAAACCCTTCACCTGCGAGGAGTGCGGCCACTCATTCCGCTGGAAGAACAACCTGCGCTCTCATCTACTCACTCACCGAGGGGAGACTTTCAGTTGTGCGCTCTGCGACAAGAGCTTCTCTCGCAAGTTCACGTTGGATCAGCACATGTTGACCAATCACAGCGGGAAGGAGCGGGAGAAGAAGTTTGTGTGCTCGCTATGTGGGGCCAGCTTCTTGACCAAGTCGGGCCTCCAGGACCACACCAACATAACTCACAGCGACGTCCGGCCGTTTGGGTGTCCCATATGTGGCCAGGCCTTCAAGTGGAAATATTACCTCAAAACTCATCAACGCATTCACGTGGGGGAGAGGCGGTTCACGTGCCCGGTGTGCTCCAAAGGTTTCTTCCGCAGCGGCGACCTGAACGAACACCAGGTGGTTCACATCGAGGACCGACCGCGGCCTCACGAGTGTGCGTTGTGCGGGAAGACATTCACCAGTAAACACCTTCTGAGGAAGCACGGCATCATCCACACAGGCATCCGCCCCTACAAGTGTGACATTTGTTCCAAAGATTTTATTTGGTGCACGTCGCTTCGGAAGCACCGAGCGGTACACGGGGAGCAAGGACTCAAGTACCTTTGTTGA
- Protein Sequence
- MEDSLDSQLPVKNEFAEDFMYVEPDLGPFINVKEERAEDESEESLSEPTERGEDENRAGISEEALFLTDEKLRKLCLEDIIKHNHLLTGSEATNLWKIRASLQKKMKKLEAKRNIADKETTFEQNNKRKLRKSVKAMKVRLKVKDREVKKRSQDVSTKDLFNCVHCNDTFDTSFELRGHLRTHAPAKCFPCPECDLSFTLKKSLKDHSLVHADKYVFNCVTCQKPFSNKQTLRRHSYIHLDVKPFKCSECQRAFADHGVLRRHLNTHFGIKPYKCLDEACGKSFGRKSDLKEHSLIHTDEKPFTCEECGHSFRWKNNLRSHLLTHRGETFSCALCDKSFSRKFTLDQHMLTNHSGKEREKKFVCSLCGASFLTKSGLQDHTNITHSDVRPFGCPICGQAFKWKYYLKTHQRIHVGERRFTCPVCSKGFFRSGDLNEHQVVHIEDRPRPHECALCGKTFTSKHLLRKHGIIHTGIRPYKCDICSKDFIWCTSLRKHRAVHGEQGLKYLC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450824;
- 90% Identity
- iTF_01447780; iTF_01450824; iTF_01445867; iTF_01448821; iTF_01446847;
- 80% Identity
- -