Tgen041101.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010004795.1:32791-46447[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0045 0.84 12.2 1.7 1 23 215 237 215 237 0.98 2 12 6.1e-05 0.011 18.0 0.3 1 23 243 265 243 265 0.96 3 12 0.00026 0.049 16.1 2.0 1 23 271 293 271 293 0.94 4 12 1.3e-05 0.0025 20.1 1.4 1 23 299 321 299 321 0.99 5 12 2.9e-05 0.0055 19.0 0.4 1 23 327 351 327 351 0.95 6 12 4.8e-05 0.0089 18.4 2.3 1 23 357 379 357 379 0.98 7 12 4.5e-06 0.00084 21.6 1.5 1 23 384 407 384 407 0.97 8 12 0.00084 0.16 14.5 0.2 1 23 416 439 416 439 0.96 9 12 4.3e-05 0.008 18.5 0.3 3 23 447 467 445 467 0.98 10 12 2.2e-05 0.004 19.5 0.2 1 23 473 495 473 495 0.97 11 12 1.3e-05 0.0024 20.2 2.5 1 23 503 525 503 525 0.95 12 12 0.0054 1 11.9 1.9 1 23 531 553 531 553 0.98
Sequence Information
- Coding Sequence
- ATGGGTCGCATTATGAGGGAAAATGTCTTCTTGAGTGACGTCATAAAAGGAAACGTGGAAGCGAAGGAGAGAAGTAAAACCACGATGGACGCCCTCAGACAAGGACAGAAGATGAAGTTTCGGGAGATATGCAAGGAAGTTGCTGACAAAACAGTGTCACAGATGGAGGACTCCTTGGATTCTCAACTTCCAGTTAAAAACGAGTTTGCCGAAGATTTTATGTACGTTGAACCAGATTTGGGGCCctttataaatgtgaaagagGAAAGGGCAGAGGACGAATCAGAAGAGAGCTTGAGTGAACCAACAGAAAGGGGTGAGGATGAAAACAGGGCTGGCATTTCTGAAGAAGCCCTCTTTCTGACGGACGAGAAGTTGAGGAAGCTGTGTTTGGAAGACATCATCAAACATAATCACCTGTTGACAGGCTCCGAGGCAACAAACTTGTGGAAAATAAGGGCTTCCTTgcagaagaaaataaagaagcTTGAAGCGAAGAGGAACATCGCGGACAAAGATACAACGTTTGAACAGaataacaaaagaaaattgCGTAAGTCTGTTAAAGCTATGAAAGTAAGATTAAAAGTTAAAGACCGCGAGGTCAAGAAAAGGTCCCAAGACGTGTCTACGAAAGACCTATTTAACTGTGTGCACTGCAATGACATCTTTGACACGTCTTTCGAACTGCGTGGACATTTGCGAACGCACGCTCCCGCCAAATGTTTCCCGTGCCCAGAGTGCGACCTGTCATTTACTCTGAAGAAGTCCTTGAAAGATCATTCGCTGGTCCACGCTGACAAGTATGTGTTTAACTGCGTGACCTGTCAGAAACCGTTCAGCAACAAGCAGACCCTGCGACGGCACTCATACATCCACCTCGACGTGAAGCCCTTCAAGTGCTCCGAGTGTCAGCGCGCCTTCGCAGACCACGGGGTCCTCAGACGACACTTGAACACTCACTTCGGTATCAAACCTTACAAGTGTCTGGACGAGACCTGCGGTAAAAGCTTTGGTCGCAAGAGTGACCTGAAAGAGCACTCGCTCATCCACACCGACGAGAAACCCTTCACCTGCGAGGAGTGTGGCCACTCATTCCGCTGGAAGAACAACCTGCGCTCTCATCTACTCACTCACCGAGGGGAGACTTTCAGTTGTGCGCTCTGCGACAAGAGCTTCTCTCGCAAGTTCACGTTGGATCAGCACATGCTGACCAATCACAGCGGGAAGGAGCGGGAGAAGAAGTTTGTGTGTTCGCTATGTGGGGCAAGCTTCTTGACCAAGTCGGGCCTCCAGGACCACACCAACATAACTCACAGCGACGTCCGGCCGTTTGGGTGTCCCATATGTGGCCAGGCCTTCAAGTGGAAATATTACCTCAAAACTCATCAACGCATTCACGTGGGGGAGAGGCGGTTCACGTGCCCCGTGTGCTCCAAAGGTTTCTTCCGCAGCGGCGACCTGAACGAACACCAGGTGGTTCACATCGAGGACCGACCTCGGCCTCACGAGTGTGCGTTGTGCGGGAAGACCTTCACCAGTAAACATCTTCTGAGGAAGCACGGCATCATCCACACAGGTGTCCGCCCCTACAAGTGTGACATTTGTTCCAAAGATTTTATTTGGTGCACATCGCTTCGGAAGCACCGAGCGGTACACGGGGAGCAAGGACTCAAGTACCTTTGTTGA
- Protein Sequence
- MGRIMRENVFLSDVIKGNVEAKERSKTTMDALRQGQKMKFREICKEVADKTVSQMEDSLDSQLPVKNEFAEDFMYVEPDLGPFINVKEERAEDESEESLSEPTERGEDENRAGISEEALFLTDEKLRKLCLEDIIKHNHLLTGSEATNLWKIRASLQKKIKKLEAKRNIADKDTTFEQNNKRKLRKSVKAMKVRLKVKDREVKKRSQDVSTKDLFNCVHCNDIFDTSFELRGHLRTHAPAKCFPCPECDLSFTLKKSLKDHSLVHADKYVFNCVTCQKPFSNKQTLRRHSYIHLDVKPFKCSECQRAFADHGVLRRHLNTHFGIKPYKCLDETCGKSFGRKSDLKEHSLIHTDEKPFTCEECGHSFRWKNNLRSHLLTHRGETFSCALCDKSFSRKFTLDQHMLTNHSGKEREKKFVCSLCGASFLTKSGLQDHTNITHSDVRPFGCPICGQAFKWKYYLKTHQRIHVGERRFTCPVCSKGFFRSGDLNEHQVVHIEDRPRPHECALCGKTFTSKHLLRKHGIIHTGVRPYKCDICSKDFIWCTSLRKHRAVHGEQGLKYLC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450824;
- 90% Identity
- iTF_01445019;
- 80% Identity
- -