Tlin003685.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010681.1:15540972-15541523[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-09 5.5e-07 30.1 0.1 1 40 12 51 12 56 0.90
Sequence Information
- Coding Sequence
- atGCCTGGAAACAAGAACACATTTCTAAACTACAGTGAAGATGCTATGAAAGCTGCAGTTGAAGAGGTTCGCCTGCACAAAATATCTATCCGAGCCGCTGCAAAAAAATTTGCAGTTCCCAGCaccacattaaaatataaattagagGGTAAATCCCCAATGGACAGAAAAATGGGCCCTCCTTCAATTCTAACAAGCAAAGAGGAGGCTGAGATAAGCAAGTGGGTAGAGAACATTGCACATGCTGGTTTTCCAGTTACCGTTGAGCAGCTGTGCATGAGTGTGGAGAAGTACATAAAAGACGTGAAACGTGATACCCCTTTTAAAGATGGAAGACCAGGCAGGACGTGGGTTATAGGTTTTCTGCGGAGAAATCCTTCGATTTCAAAAAGAGTTTCTCAAAACTTAACTGCCTCACGGGTAGCAGTCACTAAGGCAAACATACTGAATTGGTTTTCAGAAGTGAAGTCCTACATTGGAAAAGAGTATGGTGATGAGATCTTGGAAGATCCATCTCGAATATTCAATTGTGACGAGtctgcttttttttaa
- Protein Sequence
- MPGNKNTFLNYSEDAMKAAVEEVRLHKISIRAAAKKFAVPSTTLKYKLEGKSPMDRKMGPPSILTSKEEAEISKWVENIAHAGFPVTVEQLCMSVEKYIKDVKRDTPFKDGRPGRTWVIGFLRRNPSISKRVSQNLTASRVAVTKANILNWFSEVKSYIGKEYGDEILEDPSRIFNCDESAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502018; iTF_01316244; iTF_01316294; iTF_01316281; iTF_00432099; iTF_00432061; iTF_01146138;
- 90% Identity
- iTF_00256813;
- 80% Identity
- -