Dpin012330.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457133.1:15857255-15857809[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-11 3.6e-08 33.9 0.0 1 40 12 51 12 56 0.90 2 2 8.2 4.6e+03 -1.6 0.0 17 23 136 142 126 143 0.66
Sequence Information
- Coding Sequence
- atGACTGGAAACAAGAACACATTTTTAAACTACAGTGAAGATGCTATGAAAGCTGCAGTTGAAGATGTTCGCCTGCACAAAATATCTATCCGAGCCGCTGCAAAAAAATTTGCAGTCCCCAGAACGacattgaaatataaattagaGGGTAAATCACCAAAGGATAGAAAAATGAGCCCTCCTTCAAATTTAAAAAGCAAAGAGGAGGCTGAAATAAGCAAATGGGTGGAGAACATGGCACAGACTGGTTTTCCGGTCACTGTTGAGCAGCTGTGCAAAAGTGTGGAGAAGTACATGAAAGAGGTGAAGCGTGATACCCCTTTCAAAGATGGAAGACCAGGCAGGACGTGGGTTATAGGTTTTCTCCGGAGAAATCCTTCGATTTCAAAAAGAGTTTCTCAAAACTTAACTGTCTCACGGGCAGCAGTCACAAGTGAAAACATACTGAATTGGTTTTCAGAAGTGGAGTCCTACATTGGAAAAGAGTATGGTGATGAGAAGATCTTGGAAGATCCATCTCGAATATTCAATTGTGACGCGtctgcttttttttaa
- Protein Sequence
- MTGNKNTFLNYSEDAMKAAVEDVRLHKISIRAAAKKFAVPRTTLKYKLEGKSPKDRKMSPPSNLKSKEEAEISKWVENMAQTGFPVTVEQLCKSVEKYMKEVKRDTPFKDGRPGRTWVIGFLRRNPSISKRVSQNLTVSRAAVTSENILNWFSEVESYIGKEYGDEKILEDPSRIFNCDASAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438842;
- 90% Identity
- iTF_00432099; iTF_01316281;
- 80% Identity
- -