Cvir016067.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01002347.1:6311-6958[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 2.7e-06 27.6 0.0 1 40 12 51 12 56 0.90 2 2 6 1.5e+03 -0.4 0.0 3 20 77 96 77 97 0.83
Sequence Information
- Coding Sequence
- atgCCTGGAAACAAGAACACATTTCTAAACTACAGTGAAGATACTATGAAAGCTGCAGTTGAAGAGGTTCGCCTGCACAAAATATCTATCCGAGCcgctgcaaaaaaaaattcagttccCAGaaccacattaaaatataaattagaggGTAAATCCCCAATGGACAGAAAAATGGGCCCTCCTTCAATTCTAACAAGCAAAGAGGAGGCTGAGATAAGCAAGTGGGTAGAGAACATGGCACATGCTGCTTTTCCAGTTACCGTTGAGCAGCTGTGCATGAGTGTGGAGAAGTACATAAAAGACGTGAAACGTGATACCCCTTTTAAAGATGGAAGACCAGGCAGGACGTGGGTTATAGGTTTTCTACGGAGAAATCCTGCGATTTCAAAAAGAGTTTCTCAAAACTTAACTGCCTCACGGGCAGCAGTCACTAAGGCAAACATACTGAATTGGTTTTCAGAAGTGAAGTCCTACATTGGAAAAGAGTATGGTGATGAGATTTTGGAAGATCCATCTCGAATATTCAATTGTGACGagtctgaattttttttaaatcctaagGGCCCCAAAGTTCTTGCTAGAAAAGGAGATAAAACagtttatcaaaaagttaatgtTGATGAGAACAGTGCGTTACAGTTTTGGTAG
- Protein Sequence
- MPGNKNTFLNYSEDTMKAAVEEVRLHKISIRAAAKKNSVPRTTLKYKLEGKSPMDRKMGPPSILTSKEEAEISKWVENMAHAAFPVTVEQLCMSVEKYIKDVKRDTPFKDGRPGRTWVIGFLRRNPAISKRVSQNLTASRAAVTKANILNWFSEVKSYIGKEYGDEILEDPSRIFNCDESEFFLNPKGPKVLARKGDKTVYQKVNVDENSALQFW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034485;
- 90% Identity
- iTF_01502018; iTF_01502027; iTF_01034486; iTF_01034488; iTF_01152960; iTF_00889127; iTF_01091686; iTF_01438842;
- 80% Identity
- -