Tobe013333.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thera obeliscata
Gene Symbol
sip1
Assembly
GCA_947578465.1
Location
OX387917.1:8124849-8140658[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.6e-62 4.4e-58 197.5 6.0 4 275 371 624 368 624 0.97
2 2 0.24 2.9e+03 -2.0 0.0 71 114 634 679 628 687 0.69

Sequence Information

Coding Sequence
ATGTCGGACGACGAAGTTATTCGTTTTGAGATCACCGACCATGATTTGGACAATGAGTTCAATTTTAATAGACCCCGTGGAAAAAACAAGAAGGAACATCAAATATACGGCATGTGGGCTAAAGACAGTGATGAAGAGGATAATGAGGACAACATCCGTAAAAAAACCCGGAAGCCCAAAGACTACTCTGCACCTATTGGCTTTGTTATGGGTGGGGTGCAACAGGCAGGCAAGAAAAAAGAAGAAAAAAAAGAACTAGAATCAACAGAAGCATCCACATCTCGTCCCAAGTTTGCTCCAGACAGTTCTGATGATGATGAGAAGCCAAGCCTGCCTGCGGAGACTGACACAGCAGGCATCAGGAGAAAGGGACAGGGCATGCGGACAGCCAACTTGGGTGGTAGTGTGGGGACTTGGGAGAAACACACCAAGGGTATTGGAGCCAAACTACTGTTGCAGATGGGCTACAAACCAGGCAAAGGGCTTGGTAAGGACCTCCAAGGTATATCAGCTCCGGTGGAAGCCACGGTCAGGAGGGGAAGAGGTGCTATTGGAGCTTATGGACCGGAGAAAGCAGCTCTAAAAGCAAAGAAAGAAGAGGAGAAACGCATCAAAGAGAAAGAAGAACAAGAGAAAGACACGGCTGAAAAGTCCTACAACTGGAAGAAGTCTCACAAAGGCCGTTACTTCTACCGAGACTCAGCTGATGTCATACAAGAGGGTAAACCCACGATGCATACTATGGCCAGCAGTGAGCTATCTCGCGTGCCAGTGATAGACATGACGGGCAAAGAGAAGCGCGTTCTAAGTGGATACCACGCACTTCGAGCCGCGGCTCCTCGCTTTGAACATGAGCCGAGACGCAAGTGCGACCACTTCGCCGCGCCTGAACTGGTGCATAACCTGACGCTTATGGTCGAATGCTGCGAGCAGGACATAATCCAAAACGCCCGTGAACTAAACGCAGCAGAAGACGAGATCGTGGTTCTGGAGCGAGATCTCCAGGAATGCGAGTTAGGACTGAAGGAACAAGATGACATCATCGCTAAAGTTCAAGCGATCTTGCGTCGTGTGGAGGCACTGGATCGACCAGACCTGTCGCTAGAAGCGGCCTATGAAGTACTCGCTGATTTGAAGGAATCTTACCCCCTAGAATACCAGATGTTCGGCCTAGACACCATCGCCGGCAATATCGTAAGTCCTCTGCTCAGCGCGTTGCTGGCTCCCTGGCAGCCTTTGGAAGCACCTGAGGATCCTATCCCCACCTTCGTGAAATGGAGACCGCTGTTGACTGAGGAGGCGTATACCAGTTTGCTGTGGCAGCATTTCGTTCCTCATCTTACTACCGCTTCGGAAGCATGGAACCCTCGAATCCCCGAGCCGATGCTCCGTGCAGTGACAGCATGGACCGAGGCATGTCCCCCATGGGTCGCGGGGGAGCTGGTCACGAGATGCGTGGTGCCCCGCGTGCTGGCAGCCGTGAGGACCTGGGACCCCACACACGATACGCAGCCGGTGCATTGCTGGGTCCTCCCGTGGCATGACCTAGCTGGTGCAGCCTTATCCACCAGCGTATACCCCCTAATCCGTTCCCGGCTCGCGTCCGCGCTATCAGCCTGGCACCCCGCCGACGCGTCAGCGCGCGGCGTGTTGGCGGCGTGGCGTGACGCGTGGCGGGGCGCGCTCACGGCGCTGCTGCATCATCATATAGTTCCCAAGCTCGAGCATTGTCTGCATCACTCGCAGATACATCTCGTCGGACAGCAGAACACGGCATGGCTCTGGTGCGTGGATTGGCTGGACTTGCTGGGTGCACCCACCGTGGCGGCTATAGCCAGCCGCGCGTTGCTGCCTCGCTGGCTAGCTGCATTGGCGGCCTGGCTTAACGCTAACCCAGCTCATGCTACTGTACTCAACTCTTATACTGAGTTCAAGAAAATGTTCCCCGACGAAGTTCTCAAAGAGCCCGCAGTCCGCGACTCATTCCGCAAAGCCCTCGATATGATGAACAGAAGCACCGACATCGACACTGTCGAAGCGCCCCCTCCCCCTCGATTCATCCCTGGCGAAGCACCCCCACCCCCACGTTTCATCCCCGTCGACCACAAGGAATCTTCCAGAATCGCCGACGCCCTTGCATCGGCCACACAGCAAAAATCGTTCTCAGAACTGCTTGAATCTAGGTGTGTGGAGAAGGGTATTACTTTCGTGCCGCTAATCGGCAAGAACAGGGAAGGAAGGCCTATTTATAAGATCGGGGATAAACAGTGCTATGTTATAAGAAATGTGATTATGTTTTCTGATGACGCGGGCAGGAATTTTGCGCCGATCAGTATAGATCGCCTGTTGAAAATGGTTGAAGAATAA
Protein Sequence
MSDDEVIRFEITDHDLDNEFNFNRPRGKNKKEHQIYGMWAKDSDEEDNEDNIRKKTRKPKDYSAPIGFVMGGVQQAGKKKEEKKELESTEASTSRPKFAPDSSDDDEKPSLPAETDTAGIRRKGQGMRTANLGGSVGTWEKHTKGIGAKLLLQMGYKPGKGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAALKAKKEEEKRIKEKEEQEKDTAEKSYNWKKSHKGRYFYRDSADVIQEGKPTMHTMASSELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCDHFAAPELVHNLTLMVECCEQDIIQNARELNAAEDEIVVLERDLQECELGLKEQDDIIAKVQAILRRVEALDRPDLSLEAAYEVLADLKESYPLEYQMFGLDTIAGNIVSPLLSALLAPWQPLEAPEDPIPTFVKWRPLLTEEAYTSLLWQHFVPHLTTASEAWNPRIPEPMLRAVTAWTEACPPWVAGELVTRCVVPRVLAAVRTWDPTHDTQPVHCWVLPWHDLAGAALSTSVYPLIRSRLASALSAWHPADASARGVLAAWRDAWRGALTALLHHHIVPKLEHCLHHSQIHLVGQQNTAWLWCVDWLDLLGAPTVAAIASRALLPRWLAALAAWLNANPAHATVLNSYTEFKKMFPDEVLKEPAVRDSFRKALDMMNRSTDIDTVEAPPPPRFIPGEAPPPPRFIPVDHKESSRIADALASATQQKSFSELLESRCVEKGITFVPLIGKNREGRPIYKIGDKQCYVIRNVIMFSDDAGRNFAPISIDRLLKMVEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00825754;
90% Identity
iTF_00638660;
80% Identity
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