Tatr009432.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000024.1:6056518-6057702[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-106 7.3e-102 341.5 29.2 1 299 30 318 30 319 0.92 2 2 0.19 2e+03 -1.4 4.3 220 244 347 371 322 393 0.46
Sequence Information
- Coding Sequence
- ATGGATGCTTCCGGCGCTGTAGGAAGACGCAGGATTAATTCCCGTGTCAATGCAGAAGACCAAGCGTTAGATCAAATTGCAAAGGAAGCTGAAGCTCGCTTGGCAGCGCGTAGGCAAGCACGTGCCGAAGCTCGTGAAGTGCGGATTCGTGACCTTGAACGCCAACAAAGACACCAGGAGCAAAACGCCGACCGTGTGTTTGACATGCATTCTGTTAGCGGAATAGATGCTTTGTCACGAACACGCCTAAGTTCTGCGGTTATTTGTTCGCCTGTCACAAGAGCTAACTCTATGTCGTCACGTCGTAGCAGCGAGGACTCACTGGAAGAAGAGAATCGTGGACTGCGGGATATGCGGCATGAATTGAAAGAAGTAGAAGAACGTTTTCGCAAAGTAATGATAGCCAATGCACAGTTAGATAATGAATGTGCTTCACAAACGTATCAAATACAACTGTTAAAGGATAAATGTGAAGAAGTGGAAGAATCATACGCGCAACTGCAGCGAGAATTTAAGGAGAAGTTGCGTGATTCCAGCGCCCTGAAACGAAACCTTGATAAAGTGGGAGACGAATTGAGGCTTGTAAAAGGTCAGTTAGACGAACGCGACAAACTAATTGAAGAACAAGGTTTGGTGATTGTTGCAATAGAAAACGCAGACGCAACCGATGCAAAGCGTGCTTTGGTCACACTAGACAACGCGCAGCTGTTGGGTTCTGTCCAAGGCTCTCTAGACATCCGACTCAAAAAGTTTAGTGAAGAAAAACATCAGCTTCTGAGTGAGATTAAAAGTTTGGAACAGCAATTGGAAGATTATAAGTCGCGAAGTGGTAAAGGAAGTATTGTTAATGGACCTGCTGGCACAGACGATGACGAATATGAGGCGCAAAGGGAAGCAAATAAAATTATATCAGATTATAAATACAAGCTGCAAAAGGCCGAACAAGAAGTTGCTAATCTGCAGGCTAGCTTAGCACGTTCAGAAACGCAAGTGATACGATATAAGAGCACAGCAGAGGCTGCTGAAAAGGCTGAAGCCGAGTTAAAGATTGAGCGTAGAAAGTTACAGCGCGAAAACCGTGAAGCTATGGAACGCCTTGAGGAGTTGGAAACATCAAACAACCATTTACTAAAACGTTTGGACAAATTGAAGAATGCCAAGAGTGCCCTTCTGAAAGAGCTTTGA
- Protein Sequence
- MDASGAVGRRRINSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRIRDLERQQRHQEQNADRVFDMHSVSGIDALSRTRLSSAVICSPVTRANSMSSRRSSEDSLEEENRGLRDMRHELKEVEERFRKVMIANAQLDNECASQTYQIQLLKDKCEEVEESYAQLQREFKEKLRDSSALKRNLDKVGDELRLVKGQLDERDKLIEEQGLVIVAIENADATDAKRALVTLDNAQLLGSVQGSLDIRLKKFSEEKHQLLSEIKSLEQQLEDYKSRSGKGSIVNGPAGTDDDEYEAQREANKIISDYKYKLQKAEQEVANLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01023012; iTF_01200899;
- 90% Identity
- iTF_01023012;
- 80% Identity
- -