Pruf005275.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963966595.1
- Location
- OZ016501.1:37883676-37884866[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-104 3.2e-100 335.7 28.9 1 300 30 321 30 321 0.95 2 2 0.097 1.2e+03 -1.0 4.0 211 246 341 375 323 395 0.52
Sequence Information
- Coding Sequence
- atggACAACACAAACGCCGTTGGAAGACGAAGAATTAATTCCCGTGTCAACGCTGAGGACCAAGCATTGGATCAAATTGCCAAGGAGGCTGAGGCTCGGTTAGCTGCTCGCCGACAGGCTCGTGCTGAAGCACGGGAAGTTCGTATACGTGATCTGGAACGCCAGCAGAGACAACTGGAACAGAATGTTGATCGGGTATTTGACATACATACAGTCGCAAGTCTAGATCCTTTGTCACGGTCACGTATAAGTTCTGGTCTATGTGGATCTCCAGTAACAAGAGCAAGTTCAATGTCGTCACGGCGGAGCAGTGAGGACTCACTTGAAGAGGAAGGACGTGGATTACGGGAAATGAAACACGAGTTAAAAGAGATGGAGGAACGTTTCAGAAAAGTAATGATTGCTAATGCGCAATTGGATAACGAATGCTCTTCGCAAACTTATCAAATTCAACTGTTGAAAGATAAACTGGATGAGTTTGAAGAGTCACATTCCCAACTTCAGAGGGAATTTAAGGAGACAGTTCGCGAAAGTAATGCTTTAAAAAGAAGCCTCGACAAGGTGAAAGATGAACTAAGCATCGTTCAGAATCAATTAGAGGAGCGGGACAAGCTGATCGAAGAGCAAGGTTTGGTAATTGTAACAGTCGAGAATTCGGATGGCACTGATGCAAAACGCGCTCTAGTCACTTTGGATAATGCACAATTGCTAGGTTCTGTGCAAGGGTCTCTGGATATACGACTAAAAAAGTTTGGCGAAGAGAAACAGCAACTCCAGtccgaaataaaatatttagagcAGCAATTAGAAGCTTCTAAAATTCGTGTTGGAAAGGGAAATACAATGAATGGGCTCGCAATAGCAAATAATTGTGATGAGGAATATGAGGCTCAGAGAGAAGcgaacaaaattatatctgactataaatataaactacAAAAAGCCGAACAAGAAATAGCCACTCTTCAAGCGAGTTTAGCGCGATCGGAGACTCAGGTAGTTCGCTATAAGAGCACAGCCGAAGCAGCAGAGAAAGCAGAGTCCGATCTGAAAATTGAACGCAGAAAATTACAGAGGGAGAATCGTGAGGCCATGGAACGTTTGGAAGAATTGGAGACAtcaaataatcatttattaaaacgtttggataaattaaagaatgcAAAAAGTGCGCTATTGAAAGAACTTTga
- Protein Sequence
- MDNTNAVGRRRINSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRIRDLERQQRQLEQNVDRVFDIHTVASLDPLSRSRISSGLCGSPVTRASSMSSRRSSEDSLEEEGRGLREMKHELKEMEERFRKVMIANAQLDNECSSQTYQIQLLKDKLDEFEESHSQLQREFKETVRESNALKRSLDKVKDELSIVQNQLEERDKLIEEQGLVIVTVENSDGTDAKRALVTLDNAQLLGSVQGSLDIRLKKFGEEKQQLQSEIKYLEQQLEASKIRVGKGNTMNGLAIANNCDEEYEAQREANKIISDYKYKLQKAEQEIATLQASLARSETQVVRYKSTAEAAEKAESDLKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426682;
- 90% Identity
- iTF_00366502;
- 80% Identity
- -