Tpar000207.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium parvispinum
Gene Symbol
-
Assembly
GCA_011638315.1
Location
VBVR01002274.1:13148-16087[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00014 0.017 16.1 4.5 2 23 370 391 369 391 0.97
2 15 0.0062 0.73 11.0 5.1 2 23 398 420 397 420 0.95
3 15 3.6e-06 0.00042 21.2 1.5 2 23 506 527 505 527 0.97
4 15 1.6e-05 0.0018 19.1 3.6 1 23 533 555 533 556 0.96
5 15 0.00015 0.017 16.1 1.0 1 23 561 583 561 583 0.97
6 15 3.7e-06 0.00043 21.1 1.3 1 23 605 627 605 627 0.98
7 15 1.2e-06 0.00014 22.7 1.2 1 23 633 655 633 655 0.97
8 15 9.5e-06 0.0011 19.8 2.4 1 23 661 683 661 683 0.98
9 15 0.0013 0.16 13.1 0.2 1 23 689 711 689 711 0.99
10 15 4.2e-05 0.0049 17.8 1.1 1 23 717 740 717 740 0.92
11 15 1.9e-05 0.0022 18.9 1.3 1 23 746 768 746 768 0.98
12 15 0.00041 0.049 14.7 4.7 1 23 774 796 774 796 0.98
13 15 5.3e-06 0.00062 20.6 0.4 1 23 802 825 802 825 0.97
14 15 2.9e-06 0.00033 21.5 0.9 1 23 831 853 831 853 0.96
15 15 9.1e-07 0.00011 23.0 4.8 1 23 859 881 859 881 0.99

Sequence Information

Coding Sequence
atgacaaaaataatgaataaggAAATGCCGTTGAGTGTGGAATGGATACCACAAAACGCGTACATGCATAACTCTTTGGATCACTTGCTGCCGGGAGACAGGAATCAGGATTTCTTAATCATAAAGCAGGAAACAGAATTCTTTCAAAGCACCCTAAGTTCGCAGCCTGCGCAAAACAAAGTCGTACATCTGCCAGTCTTGTCCAAAGAGAAGGACAAGGAAATCAAGCAACAGGATAGCTATTCGGATGCAACAGCCTGTCAAACGGACTCTGTAAATCCTCCGCCTAAAAGATTGACCGACGTATtggagaaattatataataaaggtCGCATTGATGTAATAGAGATGACAATAGATCCaacgtttaattataaatattttttcgtttacGAAGATCAGTTTTCCAAGTTTGTTGTGCTAAAGGCTCTCCGCAGCGATACAGCCAAAGAAGTCGCGGCGAACCTGTTGGATGTATTGGGGATCATAGGGGCACCGCGAGTACTGCAGAGCGGCAATGGACGTAAGTTCGCTGAACAAATTGTACATGAGCTACGTTTGCTGTGGAATGATTTGTTCATACTGCACGGGGACACGTCTAAGTGTGAAGTTAGCTACAGGGATTTTAAGAGCTCGCTCGAATCCTGGATGAAAAAGAATCCAGCTAGGACCTGGTGCGAAGGATTGAACTTCATACAGATCTCTCACAACTCGACGTATTGTTGCCAGAACGGCAAAGTTCCATATAACATACTGTTCAGGCAGAGCGTACGCGAGAATTTTCGAAGTATAGAAAAAGATGTGGAAGGTCTGAGGACGGAAGAAGAATGGCTCAAACACTTGTCTGATAAGAAGGATGGCGATGCGGCGGCAATGACGGAAGACACGCAGAGTACATCAAATAGTATCAatCAGTGcgaagaaaacgaaaatgtACGAGATACGCAGAGTCAAAAGGCACTTTCGAAAGCCAACGATGTAAATGTCTTCAATTACGTCAACGTGAAGAATGAATCTCTAGCGAGTAACGCGCGCGCAATGGATTCGTCTACAGATGAGATAGACGCGAAGAAAGAACTGAAAGACAACGAAGATACTCAGTCCCTCAAATGCAAGTACTGTCAAAAGCAGTATATGAAAATAGGGCATTTGAAGAACCACATGAGAACGCACAAAGCGAAGCAAGTTCTCCATTGTAAGCTGTGCAATAAAACGTTTAACTTTCCAAGATTCTACTCGAAGCATATGAAACAATCGCATGGACAAGACAAATTAACTGATGAGGAGAAAGACATACCGGTCAGCAGAAATACGAGAAATAACGCCAATGCATTACCTAACAAGGAAAAATCTGTGATTCAAACACACGAGACATCCGATCCAGATACAATAAACAAAGATTGCGATTCGTCATTGGACACGAAAGAACTCTCTGGCAAGATTAGTAAGAGCTCGAATCAAACTGGTAGACGGAAGCTGCCTGCGGAGAACCGTGTGTCGAAGATACAAGCTCTACAATGTACATATTGCAAGCAGAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGCTCGCACACGAACGAACGACCGTACGTGTGCGAGGTGTGTAACAAGAGTTTCAAACAATTGGGCCATCTCAGTCAGCACTCGCTTACCCATCACGACTACCGTTCGTTCCAGTGCACAGTATGCGGCGTGAAGTTTGACTCGCTGGATTTGCTGAAGCAACATGCTCACTCGCACAAAGGTgagacgacaacgacgacgacgacgtcgtcgtccAAGATACGCGACGTCTATCGTCTGTTCGAGTGCGACAGCTGCAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGATTGCAAGGTGTGCGGCAAGCGGTTCAAGCAGGCCGGCCACGTCAAGTCGCACATGCTGGTACACACGGGCGAACGTCGCTTCCAGTGCACCGTGTGCTCGAAACGCTTCAGCCTGTCGAACTCGTTGAAGAAGCACATGTATGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGCTTCCTCGAGAAGCGCAACCTTAACGGCCACTTATTAACGCACACCAACGAGCGGCCGTACTGCTGCAAGATCTGCGGCAAGCGGTACACCCTGGCGGACACTCTGCGCCGTCACGTGAGCGCCGCGCACGAAGATGGTCGTACGTATCAGTGCGAGATCTGTGCCAAGATGTTCAAGCAACTGGCACATCTATCGGTGCACAAGAAGGTGCACAACGACGAGCGGCCGTTCCAATGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCACCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCGACGTTCGTCAGGAAGACGAATCTACAGACGCACATCTCGTCCGCGCACATGAACGAGCGTCCGTATACCTGCAACATTTGCGGCAAACGCTTCAAGCAGATCAGTCATCTCAACGGCCACGTGGTCGTGCACAGCAATTTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTCGACAATCTGAAGAAGCATATGCGCCTTCATACGAAGAACAAGGAGTGA
Protein Sequence
MTKIMNKEMPLSVEWIPQNAYMHNSLDHLLPGDRNQDFLIIKQETEFFQSTLSSQPAQNKVVHLPVLSKEKDKEIKQQDSYSDATACQTDSVNPPPKRLTDVLEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDQFSKFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQIVHELRLLWNDLFILHGDTSKCEVSYRDFKSSLESWMKKNPARTWCEGLNFIQISHNSTYCCQNGKVPYNILFRQSVRENFRSIEKDVEGLRTEEEWLKHLSDKKDGDAAAMTEDTQSTSNSINQCEENENVRDTQSQKALSKANDVNVFNYVNVKNESLASNARAMDSSTDEIDAKKELKDNEDTQSLKCKYCQKQYMKIGHLKNHMRTHKAKQVLHCKLCNKTFNFPRFYSKHMKQSHGQDKLTDEEKDIPVSRNTRNNANALPNKEKSVIQTHETSDPDTINKDCDSSLDTKELSGKISKSSNQTGRRKLPAENRVSKIQALQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHSHKGETTTTTTTSSSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCNICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01421706; iTF_01422379; iTF_01423823;
80% Identity
-