Timm003544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium immigrans
Gene Symbol
-
Assembly
GCA_011636585.1
Location
VBVO01003846.1:742-3666[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00014 0.017 16.1 4.5 2 23 372 393 371 393 0.97
2 15 0.006 0.74 11.0 5.1 2 23 400 422 399 422 0.95
3 15 3.4e-06 0.00043 21.2 1.5 2 23 509 530 508 530 0.97
4 15 1.5e-05 0.0019 19.1 3.6 1 23 536 558 536 559 0.96
5 15 0.00014 0.017 16.1 0.4 1 23 564 586 564 586 0.96
6 15 3.5e-06 0.00044 21.1 1.3 1 23 607 629 607 629 0.98
7 15 1.1e-06 0.00014 22.7 1.2 1 23 635 657 635 657 0.97
8 15 9.1e-06 0.0011 19.8 2.4 1 23 663 685 663 685 0.98
9 15 0.00071 0.089 13.9 0.2 1 23 691 713 691 713 0.99
10 15 4e-05 0.005 17.8 1.1 1 23 719 742 719 742 0.92
11 15 1.8e-05 0.0023 18.9 1.3 1 23 748 770 748 770 0.98
12 15 0.0004 0.049 14.7 4.7 1 23 776 798 776 798 0.98
13 15 5e-06 0.00063 20.6 0.4 1 23 804 827 804 827 0.97
14 15 2.7e-06 0.00034 21.5 0.9 1 23 833 855 833 855 0.96
15 15 8.7e-07 0.00011 23.0 4.8 1 23 861 883 861 883 0.99

Sequence Information

Coding Sequence
atgacaaaaataataatgaataaggAAATGCCGTTGAGTGTGGAATGGATACCACAAAATGCATACATGCATAACTCTTTGGATCACTTGCTGCCGGGAGACAGGAATCAGGACTTCTTAATCATAAAGCAGGAAACAGAATTCTTTCAAAGCACCCTAAGTTCGCAGTCTACGCAAAACAAAGTCGTGCACCTGCCAGTCTTGTCCAAAGAAAAGGACAAGGAAATCAAGCAACAGAGTAGCTATTCGGATGCAACAGCCTGTCAAACGGACACTGTAAATCCGCCGCCTAAAAGATTGACCGACGTATTGgagaaattatacaataaaggTCGCATTGATGTAATAGAGATGACAATAGACCCaacgtttaattataaatactttttcgtTTACGAAGATCAGTTTTCCAAGTTTGTTGTGCTAAAGGCTCTCCGTAGCGATACAGCCAAAGAGGTCGCGGCGAATCTGTTAGATGTATTGGGGATCATAGGGGCACCACGAGTGCTGCAGAGCGGCAATGGACGTAAGTTTGCTGAACAAATTGTACATGAGCTACGTTTGCTATGGAATGATTTGTTCATACTTCACGGGGACACGTCTAAGTGTGAAGTTAGCTACAGGGATTTTAAGAGCTCACTCGAATCCTGGATGAGAAAGAATCCAGCTAGAACCTGGTGCGAAGGACTGAACTTCATACAGATCGCTCACAACTCGACGTATTGCTGCCAGAACGGCAAAGTTCCATATAACATACTGTTCAGACAGAGCGTACGCGAGAATTTTCGAAATGTAGAAAAAGAGGTGGAAAGTCTGAGGACGGAAGAAGAATGGCTCAAACATTTGTCAGATAAGGATGGCGATGCGGCGGTAATGACGGAAGACACGCAGAGTACATCAAATAGTACCAatCAGTGCGAAGAAAACGAAAATGTACGAGATACGCAGAGTCAAAAGGCCGAAAGCCTTTCGAAAGCCGACGATGTAAATGTCTTCAGTTACATCAACGTGAAGAATGAATCTCTGGCGAGTAACACGCGCGCAATGGATTCGTCTACAGATGAGACAGacgcgaaaaaagaaatgaaagacaACGAAGATACTCAGTCCCTCAAATGCAAGTACTGTCAAAAACAGTATATGAAAATAGGGCATTTGAAGAACCACATGAGAACGCACAAAGCGAAGCAAGTTCTCCATTGTAAACTGTGCAATAAAACGTTTAACTTTCCAAGATTCTATTCGAAGCATATGAAACAATCGCATGGACAAGATAAATTAACTGATGAGGAGAGAGATATACCGGTCAGCAGAAATACGAGAAACAACGCCAATGCATTACCTAACAAGGAAAAATCTGTGATTCAAACAACACACGAGACATCCGATCCCGAGACAATAAACAAAGATTGCGATTCGTCACTGGACACGAAGGAACTCTCTGGCAAGATCAGTAAGAGTTCGAATCAAACTGGTAGACGGAAGCTGCCTGCGGAGAATCGTGTGTCGAAGATACAAGCTCTACAGTGTACATATTGCAAGCAGAAATTCAGCTTCCCGAGCGTGTTGGAGAGACACATGCGCTCGCACACGAACGAACGGCCATACGTGTGCGAGGTGTGTAACAAGAGCTTCAAACAATTGGGCCATCTCAGTCAGCACTCGCTGACCCATCACGACTACCGTTCATTCCAGTGCACAGTATGCGGCGTGAAGTTCGACTCGCTGGATTTGCTGAAGCAACATGCTTACTCGCACAAAGgtgagacgacgacgacgaagacgtCGTCGTCCAAGGTACGCGACGTCTATCGTCTGTTCGAGTGCGACAGCTGTAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTGTGCGGCAAGCGGTTCAAGCAGGCCGGCCACGTCAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACCGTGTGCTCGAAACGCTTCAGCCTGTCGAACTCGCTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACATATGCGGCGCGCGCTTCCTCGAGAAGCGCAACCTCAACGGTCACTTGCTGACGCACACCAACGAGCGTCCATACTGCTGCAAGATCTGCGGCAAGCGGTACACCCTGGCGGACACTCTGCGCCGTCACGTGAGCGCCGCGCACGAGGACGGTCGTACGTATCAGTGCGAGATCTGTGCCAAGATGTTCAAGCAGCTGGCACATCTGTCGGTGCATAAGAAGGTGCACAATGACGAGCGACCGTTCCAGTGTCATTTGTGCGAGAAGAACTTCAAGCATAAGAATGTGCTCAAGTCGCACCTGGCGATCCACGCGAACGTACGGCCATTCGAATGCGATGTGTGCAAGGCGACGTTCGTCAGGAAGACGAATCTACAGACGCACATCTCGTCCGCACACATGAATGAGCGTCCGTATACCTGTAACATCTGCGGCAAGCGCTTCAAGCAGATCAGTCATCTCAACGGTCACGTGGTCGTACACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTCGACAATCTGAAGAAGCATATGCGCCTTCATACGAAGAACAAGGAGTGA
Protein Sequence
MTKIIMNKEMPLSVEWIPQNAYMHNSLDHLLPGDRNQDFLIIKQETEFFQSTLSSQSTQNKVVHLPVLSKEKDKEIKQQSSYSDATACQTDTVNPPPKRLTDVLEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDQFSKFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQIVHELRLLWNDLFILHGDTSKCEVSYRDFKSSLESWMRKNPARTWCEGLNFIQIAHNSTYCCQNGKVPYNILFRQSVRENFRNVEKEVESLRTEEEWLKHLSDKDGDAAVMTEDTQSTSNSTNQCEENENVRDTQSQKAESLSKADDVNVFSYINVKNESLASNTRAMDSSTDETDAKKEMKDNEDTQSLKCKYCQKQYMKIGHLKNHMRTHKAKQVLHCKLCNKTFNFPRFYSKHMKQSHGQDKLTDEERDIPVSRNTRNNANALPNKEKSVIQTTHETSDPETINKDCDSSLDTKELSGKISKSSNQTGRRKLPAENRVSKIQALQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAYSHKGETTTTKTSSSKVRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDICGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCNICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01423080;
80% Identity
-