Tbic001197.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium bicarinatum
Gene Symbol
-
Assembly
GCA_011636605.1
Location
VBVP01000786.1:28773-32254[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00012 0.017 16.1 4.5 2 23 368 389 367 389 0.97
2 15 0.0053 0.73 11.0 5.1 2 23 396 418 395 418 0.95
3 15 3.1e-06 0.00042 21.2 1.5 2 23 505 526 504 526 0.97
4 15 1.4e-05 0.0018 19.1 3.6 1 23 532 554 532 555 0.96
5 15 0.00013 0.017 16.1 1.0 1 23 560 582 560 582 0.97
6 15 3.2e-06 0.00043 21.1 1.3 1 23 602 624 602 624 0.98
7 15 1e-06 0.00014 22.7 1.2 1 23 630 652 630 652 0.97
8 15 3.6e-05 0.0049 17.8 2.1 1 23 658 680 658 680 0.98
9 15 0.0011 0.16 13.1 0.2 1 23 686 708 686 708 0.99
10 15 3.6e-05 0.0049 17.8 1.1 1 23 714 737 714 737 0.92
11 15 1.6e-05 0.0022 18.9 1.3 1 23 743 765 743 765 0.98
12 15 0.00036 0.048 14.7 4.7 1 23 771 793 771 793 0.98
13 15 4.5e-06 0.00062 20.6 0.4 1 23 799 822 799 822 0.97
14 15 2.4e-06 0.00033 21.5 0.9 1 23 828 850 828 850 0.96
15 15 7.8e-07 0.00011 23.0 4.8 1 23 856 878 856 878 0.99

Sequence Information

Coding Sequence
atgacaaaaataataatgaataaggAAATGCCGTTAAGTGTGGAATGGATACCACAAAACGCATACGTGCATAACTCTTTGGATCACTTGCTGCCGGGAGACAGGAATCAGGACTTCTTAATCATAAAGCAGGAAACAGAATTCTTTCAAAGCACCCTAAGTTCGCAGTCTGCGCAAAACAAAGTTGTGCACCTGCCAGTCTTGTCCAAAGAGAAGGACAAGGAAATTAAGGATAGCTATTCGGATGCAACAGCCTGTCAAACGGACTCTGTAAATCCGCCGCCTAAAAGATTGACCGACGTATcggagaaattatataataaaggtCGCATTGATGTAATAGAGATGACAATAGACCcaacgtttaattataaatactttttcgtTTACGAAGATCAGTTTTCCAAGTTTGTTGTGCTAAAGGCTCTCCGTAACGATACAGCCAAAGAAGTCGCAGCGAACCTGTTAGATATATTGGGGATTATAGGAGCACCGCGAGTGCTGCAGAGCGGCAATGGACGTAAGTTTGCTGAACAAATTGTACATGAGCTACGTTTGCTGTGGAATGATTTGTTCATTCTGCACGGGGACACGTCTAAGTGTGAAGTTAGCTATAGGGATTTTAAGAGCTCGCTCGAATCCTGGATGAGAAAGAATCCAGCTAAGACCTGGTGCGAAGGACTGAACTTCATACAGATCGCTCACAACGCGACGTATTGCTGCCAGAACGGCAAAGTTCCATATAACATACTGTTCAGACAGAGCGTACGCGAGAATTTTCGAAATGTAGAAAAAGAGGTGGAAGGTCTGAGGACGGAAGAAGAATGGCTCAAACATTTGTCAGATAAGAAGGATGGCGATGCGGCGACAATGACGGAAGACACGCAGAGTACATCAAATAGTATCAatTGCGAAGAAAACGAAAATGTACGAGATACGCAGAGTCAAAAGACATTTGCGAAAGCCGACGATGTAAATGTCTTCAGTTACGTCAACGTGAAGAATGAATCTCTGGCGAGTAACGCGCGCGCAATGGATTCGTCTACAGATGAAGTAGACgcgaagaaagaaatgaaagacaACGAAGATACTCAGTCCCTCAAATGCAAGTACTGTCAAAAGCAGTATATGAAAATAGGGCATTTGAAGAACCACATGAGAACGCACAAAGCGAAGCAAGTTCTCCATTGTAAGTTGTGCAATAAAACGTTTAACTTTCCAAGATTCTACTCGAAGCATATGAAACAATCGCATGGACAAGATAAATTAACTGAtgaggagagagagataccGGTCAGTAGAAATACGAGAAACAACGCCAATGCATTACCTAACAAGGAAAAATCTGTGATTCAAACGACACCCGAGACATCCGATCCCGAGACAATAAACAAAGATTGCGATTCGTCACTGGACACGAAGGAACTCTCTGGCAAAATCAGTAAGAGCTCGAATCAAACTGGTAGACGGAAGCTGCCTGCGGAGAATCGTGTGTCGAAGATACAAGCTCTACAGTGTACATATTGCAAGCAGAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGCTCGCACACGAACGAACGGCCGTACGTGTGCGAGGTGTGTAACAAGAGCTTCAAACAATTGGGCCATCTCAGTCAGCACTCGCTGACCCATCACGACTACCGTTCGTTCCAGTGCACAGTATGCGGCGTGAAGTTCGACTCGCTGGATTTGCTGAAGCAACATGCTCACTCACATAAAGGTgagacgacgaagacgacgtCATCGTCCAAGATACGCGACGTCTATCGTCTGTTCGAGTGCGACAGTTGTAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTATGCGGCAAGCGGTTCAAGCAGGCCGGCCACGTCAAGTCGCACATGCTGGTTCACACGGGCGAGCGTCGCTTCCAGTGCACCGTGTGCTTGAAACGCTTCAGCCTGTCGAACTCGCTGAAGAAGCACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGTTTCCTCGAGAAGCGCAACCTCAACGGCCACTTACTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAGCGGTACACCCTGGCGGACACTCTGCGCCGTCATGTGAGCGCCGCGCACGAGGACGGTCGTACGTATCAGTGCGAGATCTGTGCCAAGATGTTCAAGCAACTGGCACATCTGTCGGTCCACAAGAAGGTGCACAACGATGAGCGGCCGTTCCAGTGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCACCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCGACGTTCGTCAGGAAGACGAATCTACAGACGCACATCTCGTCCGCGCACATGAACGAGCGTCCGTATACCTGCAACATCTGCGGCAAGCGCTTCAAACAGATCAGTCATCTCAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTCGACAATCTGAAGAAGCATATGCGCCTTCATACGAAGAACAAGGAGTGA
Protein Sequence
MTKIIMNKEMPLSVEWIPQNAYVHNSLDHLLPGDRNQDFLIIKQETEFFQSTLSSQSAQNKVVHLPVLSKEKDKEIKDSYSDATACQTDSVNPPPKRLTDVSEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDQFSKFVVLKALRNDTAKEVAANLLDILGIIGAPRVLQSGNGRKFAEQIVHELRLLWNDLFILHGDTSKCEVSYRDFKSSLESWMRKNPAKTWCEGLNFIQIAHNATYCCQNGKVPYNILFRQSVRENFRNVEKEVEGLRTEEEWLKHLSDKKDGDAATMTEDTQSTSNSINCEENENVRDTQSQKTFAKADDVNVFSYVNVKNESLASNARAMDSSTDEVDAKKEMKDNEDTQSLKCKYCQKQYMKIGHLKNHMRTHKAKQVLHCKLCNKTFNFPRFYSKHMKQSHGQDKLTDEEREIPVSRNTRNNANALPNKEKSVIQTTPETSDPETINKDCDSSLDTKELSGKISKSSNQTGRRKLPAENRVSKIQALQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHSHKGETTKTTSSSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCLKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCNICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01423080;
80% Identity
-