Tbic010878.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01004637.1:8584-11731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.5e-05 0.01 16.8 1.2 1 23 44 66 44 66 0.97 2 18 0.0033 0.45 11.6 0.6 2 23 69 90 69 91 0.94 3 18 6.3 8.5e+02 1.3 0.5 1 23 96 119 96 119 0.83 4 18 0.0012 0.17 13.0 0.6 2 23 126 148 125 148 0.95 5 18 0.0021 0.28 12.3 1.1 3 23 155 176 154 176 0.95 6 18 0.00041 0.055 14.5 0.2 1 23 181 203 181 203 0.99 7 18 0.00042 0.057 14.5 0.9 1 23 212 234 212 234 0.97 8 18 3.1e-05 0.0043 18.0 0.1 1 23 240 262 240 262 0.99 9 18 7.2e-06 0.00098 20.0 0.1 1 23 267 289 267 289 0.98 10 18 0.55 75 4.6 4.7 2 23 374 395 373 395 0.96 11 18 0.00012 0.016 16.2 2.4 1 23 397 420 397 420 0.96 12 18 0.00066 0.09 13.8 1.5 1 23 425 448 425 448 0.97 13 18 0.00015 0.02 15.9 2.1 1 23 454 477 454 477 0.95 14 18 0.00078 0.11 13.6 2.0 2 23 484 506 483 506 0.95 15 18 0.0011 0.15 13.1 0.2 1 23 511 533 511 533 0.97 16 18 0.00045 0.062 14.3 0.5 3 23 541 560 540 560 0.98 17 18 4.1e-06 0.00056 20.8 0.1 1 23 566 588 566 588 0.97 18 18 0.00064 0.087 13.9 0.4 1 23 594 616 594 616 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGAATCAAGAACGAAGGCATTCGGGATTCCCACACATTCTTTATCGACACATCTTCGAGTATCGCCGAGATAATCAGCACGGACAGCAGTAAGGAAAATAGGAGTGTGGTAAAACGCCTGCATTACGCTTGCGACGTTTGCGCATTCCCGTGTCGGACGAAGGGAAATTTAAGAAAGCACATGCAGCTTCACAAGAACACGTGTAGAGTCTGCAACGAGCTGTTCGTCTCGTCCGAGAAGCTAGAACTTCACATGGTCGTGCATCACGGCGAGCCCAAGTACACCTGCAAACTGTGCTACTCCGTAGTATGGAACAAGCCGGACATGAAGAAGCACTTCCTCGTGAGCCACTTGGATCCTTTCTGCAACACGTGCAACGCCTGCAATAAGGCGTTCCAATCGAAGTACGCTATAGAGAGGCACATGTATAGCCAGCACACGAAACTCTCGGTGGCGTGCACCATTTGTAGACGCGTCTACAACAGCTTTCACGCGCTGAAAGCGCATACCAAGCTCATTCACCTAAAGACTGGTTACCAGTGCGAGATCTGCAAGCGGCGTCTTCTCTCCGCGGATTCTCTGGAGGCGCACCTACGACGGCACGAGGGCACGCGAAACATGGACAGTTATATCTGCACAACGTGTGGAGAGACTTTTCTCACGAAGAACAAGCTGAACAAACATGTGACCATCCACGGCGAGATCAATCCCTACGTTTGCCCGGTCTGTCAAAAAGCCTTTGAGAAACGGGCGAATCAAGTGCAGCATATTTTGACACACATGAGTAACGTTTACGCGTGCGACATATGCGGGTTGAGATACTCTCGAAGAGCCGCCTTGATATGGCATAGGAAAATGCATCCTGGACCGCTCGGTAAACTGCCGGTTATACCCGTAATAGGCATTGTGAGCGAaGGGGATCCGTTGAACGTTGAGTTCAATGTCCAGAAACCATTCGCTAGAGTCGAATGTGAATGGTCAAAAAGTGAAAAGTTAACAGAACATGAAGGGCGATTACCAGAAAAGATAAATGCGACCCTAACGAAAGATGAGCTTAATCCGCGGATTGTAACTGAAGAGAATCGAACGATTAGAAAAAAGACAATGTGTGTAGAATGCGATCATTGTTGCCGCAAGTTCTTGAAGAAGAGCAACCTCGCCGAGCATCTGAAGCAGCATAGGCACAAATGCACCGATTGTCCAAAGACCTTCAGCCTTCGACGTTATTTGGTCTCCCACGTCGAAAAGAATCATCGGCAGCAGATGTACGAATGCAGCGTGTGCAAGTACAAAAGCAACAATAAAGGCACCTTGAAGAATCACTATATCCGGCTGCACACGAGCAACTATGACTACGCGTGTGATACGTGCGGTAAGCAGTTCAAGATAAAGAAGGCCTTGAATCACCACGTGAAGCAGAATCATAGTGAAGCTCCGCCGATCGTGTGCGATGTTTGCGGTCATTTCAGCAAGAACCTCCACGCCCTTAAAGCTCACATGAAGTATAGGCATTACAAGCCGGAGTTTGTTTGCCGGATATGCCGACGAGGTATGACGACACAAGAGAATTTAGAGCAACATCTTATGTGGCACGAAACCAGAGAGAAGGTACTCTGTCCGACTTGCGGCAAGAGGTTCAGGGGACGCGATCTGGACTCGCACATGAGAGTGCACACTGGGGTGAAGCCGTTCCCTTGCCCTGTCTGTGGAAAGACTTTTCGACGACAAACTGCTCAAGAGCAACATGTGTTAATCCACACTGGAAAGAGACCCTACATTTGCGATATTTGTGGTCAAGCGTTCGCCCAAAAGCCCGGCCTGATCTGCCACAGGAAGAGACATCCTGGCCCATTGCCCCCATTACCTGTAGTCTCTATCAAGAACATTGTCACGGAATTCACGAAAGAATATGCGACGAAAAACGCAGTCATAAAGGttgaataa
- Protein Sequence
- MEGIKNEGIRDSHTFFIDTSSSIAEIISTDSSKENRSVVKRLHYACDVCAFPCRTKGNLRKHMQLHKNTCRVCNELFVSSEKLELHMVVHHGEPKYTCKLCYSVVWNKPDMKKHFLVSHLDPFCNTCNACNKAFQSKYAIERHMYSQHTKLSVACTICRRVYNSFHALKAHTKLIHLKTGYQCEICKRRLLSADSLEAHLRRHEGTRNMDSYICTTCGETFLTKNKLNKHVTIHGEINPYVCPVCQKAFEKRANQVQHILTHMSNVYACDICGLRYSRRAALIWHRKMHPGPLGKLPVIPVIGIVSEGDPLNVEFNVQKPFARVECEWSKSEKLTEHEGRLPEKINATLTKDELNPRIVTEENRTIRKKTMCVECDHCCRKFLKKSNLAEHLKQHRHKCTDCPKTFSLRRYLVSHVEKNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYATKNAVIKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229186;
- 90% Identity
- iTF_01423827; iTF_01422383; iTF_01407573; iTF_01409384; iTF_01405946; iTF_00128416; iTF_00129177;
- 80% Identity
- -