Tsim014074.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01003484.1:6946-10090[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.7e-05 0.01 16.8 1.2 1 23 44 66 44 66 0.97 2 18 0.0066 0.78 10.9 0.7 2 23 69 90 69 91 0.94 3 18 3.4 4e+02 2.3 0.5 1 23 96 119 96 119 0.89 4 18 0.0014 0.17 13.0 0.6 2 23 126 148 125 148 0.95 5 18 0.0024 0.28 12.3 1.1 3 23 155 176 154 176 0.95 6 18 0.00047 0.055 14.5 0.2 1 23 181 203 181 203 0.99 7 18 0.00048 0.057 14.4 0.9 1 23 212 234 212 234 0.97 8 18 3.6e-05 0.0043 18.0 0.1 1 23 240 262 240 262 0.99 9 18 8.3e-06 0.00098 20.0 0.1 1 23 267 289 267 289 0.98 10 18 0.004 0.47 11.6 2.6 2 23 378 399 377 399 0.97 11 18 0.00014 0.016 16.2 2.4 1 23 401 424 401 424 0.96 12 18 0.00076 0.09 13.8 1.5 1 23 429 452 429 452 0.97 13 18 0.00017 0.02 15.9 2.1 1 23 458 481 458 481 0.95 14 18 0.0009 0.11 13.6 2.0 2 23 488 510 487 510 0.95 15 18 0.0013 0.15 13.1 0.2 1 23 515 537 515 537 0.97 16 18 0.00052 0.062 14.3 0.5 3 23 545 564 544 564 0.98 17 18 4.7e-06 0.00056 20.8 0.1 1 23 570 592 570 592 0.97 18 18 0.00074 0.087 13.9 0.4 1 23 598 620 598 620 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGAATCAAGAACGAAGGCATTCGGGATTCCCACACATTCTTTATCGACACATCTTCGAGTATCGCCGAGATAATCAGCACGGACAGCAGTAAGGAAAATAGGAGTGTGGTGAAACGCCTGCATTACGCTTGCGACGTTTGCGCATTCCCGTGTCGGACGAAGGGAAATTTAAGAAAGCACATGCAACTTCACAAGAACACGTGTAGACTCTGCAACGAGTTGTTCGTCTCGTCAGAGAAGCTAGAACTTCACATGGTCGTGCATCACGGCGAGCCCAAGTACACCTGCAAACTGTGCTACTCCGTAGTGTGGAACAAGGCGGACATGAAGAAGCACTTCCTCGTGAGCCACTTGGATCCCTTCTGCAACACGTGCAACGCCTGCAATAAGGCGTTCCAATCGAAGTACGCTATAGAGAGGCACATGTACAGCCAGCACACGAAACTCTCGGTGGCGTGCACCATTTGTAGACGCGTCTACAACAGTTTCCATGCGCTGAAAGCGCATACCAAGCTCATTCACCTAAAGACTGGTTACCAGTGCGAGATCTGCAAGCGGCGTCTTCTCTCCGCGGACTCTCTGGAGGCGCACCTACGACGGCACGAGGGCACGCGAAACATGGACAGTTATATCTGCACAACGTGCGGAGAGACTTTTCTCACGAAGAACAAGCTGAACAAACATGTGACTATCCACGGCGAGATCAATCCCTACGTTTGCCCGGTCTGCCAAAAAGCCTTTGAGAAACGGGCGAATCAAGTGCAACATATTTTGACACACATGAGTAACGTTTACGCGTGCGACATATGCGGGTTGAGATACTCTCGAAGAGCTGCCCTGATATGGCACAGGAAAATGCATCCTGGACCGCTCGGAAAACTGCCGGTTATACCCGTGATAGGCATTGTGAGCGAaATGGATCCGTTGAACGTTGAGTTCAATGTCCAGAAACCATTCGCTAGAGTTGAATGTGAATGGTCAAAAAGTGAAAAGTCAACAGAAAAGTTAACAGAGCATGAAGGGCGATTACCAGAAAAGATAAATGCGACCCTAACGAAAGATGAGCTTAATCCGCAGATTGTAACTGAAGAGAATCGATCGATTAGAAAAAAGACAATGTGTGTAGAATGCGATCATTGTCGCCGCAAGTTCTTGAAGAAGAGCAACCTCGCCGAGCATCTGAAGCAGCATAGGCACAAATGCACCGATTGCCCGAAGACCTTCAGCCTTCGACGTTATCTGGTCTCCCACGTCGAAAAGAATCATCGGCAACAGATGTACGAGTGCAGCGTGTGCAAGTATAAAAGCAACAATAAAGGTACCCTGAAGAATCACTATATCCGGCTGCACACGAGCAACTATGACTACGCGTGCGATACGTGCGGTAAGCAGTTCAAGATAAAGAAGGCCTTGAATCACCACGTGAAGCAGAATCATAGTGAAGCTCCGCCGATCGTGTGCGACGTTTGCGGTCACTTCAGCAAGAACCTCCACGCCCTCAAAGCTCACATGAAGTACAGGCATTACAAGCCGGAGTTTGTTTGCCGGATATGTCGACGAGGTATGACGACACAAGAGAATTTAGAGCAACATCTTATGTGGCACGAAACCAGGGAGAAGGTACTCTGTCCGACTTGCGGCAAGAGGTTCAGGGGACGCGATCTGGACTCGCACATGAGAGTGCACACCGGGGTGAAGCCGTTTCCTTGCCCTGTCTGTGGAAAGACTTTTCGACGGCAAACTGCTCAAGAGCAACATGTGTTGATCCACACTGGAAAGAGACCCTACATTTGCGACATTTGTGGCCAAGCGTTCGCCCAAAAGCCCGGCCTGATCTGCCACAGGAAGAGACATCCTGGCCCGTTGCCCCCATTACCTGTAGTCTCTATCAAGAACATTGTCACGGAATTCACGAAAGAATATGCGACGAAAAACGCAGTCATAAAGgttgaataa
- Protein Sequence
- MEGIKNEGIRDSHTFFIDTSSSIAEIISTDSSKENRSVVKRLHYACDVCAFPCRTKGNLRKHMQLHKNTCRLCNELFVSSEKLELHMVVHHGEPKYTCKLCYSVVWNKADMKKHFLVSHLDPFCNTCNACNKAFQSKYAIERHMYSQHTKLSVACTICRRVYNSFHALKAHTKLIHLKTGYQCEICKRRLLSADSLEAHLRRHEGTRNMDSYICTTCGETFLTKNKLNKHVTIHGEINPYVCPVCQKAFEKRANQVQHILTHMSNVYACDICGLRYSRRAALIWHRKMHPGPLGKLPVIPVIGIVSEMDPLNVEFNVQKPFARVECEWSKSEKSTEKLTEHEGRLPEKINATLTKDELNPQIVTEENRSIRKKTMCVECDHCRRKFLKKSNLAEHLKQHRHKCTDCPKTFSLRRYLVSHVEKNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYATKNAVIKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229186;
- 90% Identity
- iTF_01421711;
- 80% Identity
- -