Apic018421.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000067.1:55868-58824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.1e-05 0.01 16.7 1.8 1 23 44 66 44 66 0.97 2 17 0.0023 0.26 12.3 0.6 2 23 69 90 69 91 0.94 3 17 0.0012 0.13 13.2 0.7 2 23 126 148 125 148 0.95 4 17 0.0026 0.29 12.1 1.1 3 23 155 176 154 176 0.95 5 17 0.00051 0.057 14.4 0.2 1 23 181 203 181 203 0.99 6 17 0.00033 0.037 15.0 0.5 1 23 212 234 212 234 0.97 7 17 3.9e-05 0.0044 17.8 0.1 1 23 240 262 240 262 0.99 8 17 8.9e-06 0.001 19.9 0.1 1 23 267 289 267 289 0.98 9 17 0.0043 0.48 11.4 2.6 2 23 376 397 375 397 0.97 10 17 9.6e-05 0.011 16.6 1.6 1 23 399 422 399 422 0.96 11 17 0.00082 0.092 13.7 1.5 1 23 427 450 427 450 0.97 12 17 0.00018 0.021 15.7 2.1 1 23 456 479 456 479 0.95 13 17 0.00097 0.11 13.5 2.0 2 23 486 508 485 508 0.95 14 17 0.0014 0.16 13.0 0.2 1 23 513 535 513 535 0.97 15 17 0.00056 0.063 14.2 0.5 3 23 543 562 542 562 0.98 16 17 4.6e-06 0.00052 20.8 0.1 1 23 568 590 568 590 0.97 17 17 0.064 7.2 7.7 0.0 1 13 596 608 596 610 0.91
Sequence Information
- Coding Sequence
- ATGGATGGAATCAAGAGCGAAGGCATTCGGGATTCCCATGCATTCTTTATTCAGACGTCTTCGAGTATCGCCGAGATAATCAGCACGGAGAACAGTAAAGAAAACAGGAGTGTAGTGAGACGCTTACATTACGCTTGCGACGTTTGCTCGTTTCCGTGCCGAACGAAGGGGAGTTTAAGAAAACACATGCAGCTTCACAAGAACACATGTAGAATCTGCAACGAGCTGTTCGTCTCGTCGGAGAAGCTAGAACTTCACATGGTCGTGCATCACGGCGAGCCCAAGTACGCCTGTAAACTGTGCTACTCCGTCGTATGGAACAAACCAGACATGAAGAAGCACTTCCTCGTGAGCCACTTAGATCCTTTCTGCAACACATGCACCGCTTGCAATAAGGTGTTCCAATCGAAATACGCTATAGAGAGGCACATGTACAGCCAGCACACGAAACTCTCGGTGGCGTGCACCATCTGCAGACGCGTCTACAACAGCTTCCACGCGCTGAAGGCGCACACCAAGCTCATTCATCTGAAGACCGGTTACCAGTGCGAGATCTGCAAGCGGCGTCTCCTCTCCGCGGATTCTCTGGAGGCGCATCTACGACGGCACGAAGGCACGCGAAACATGGACACCTACATCTGCACAACGTGCGGAGAGACTTTCCTCACCAAAAATAAGTTGAATAAACACGTGATTATTCATGGCGACATCAATCCCTACGTCTGTCCGGTCTGCCAAAAAGCCTTTGAGAAACGAGCGAATCAAGTGCAACATATTTTAACGCACATGAGTAACGTTTACGCGTGCGACATATGCGGATTGAGATACTCACGAAGAGCTGCCCTGATATGGCACAGGAAAATGCATCCTGGTCCGCTTGGGAAACTGCCGGTTATACCCGTGATAGGCATTGTGAGTGAAGTGGCAGATCCATTGAACGTTGAACCCAATGTCCAGAAACTATTCGACAGAATTGAATGCGAATGGACAAAAAGAGAAAAGTCGTTAACAGAACATGAAGGACGACTGTTAGAAAAGATAAATGCAAATCTCACAAGAGAGGAGATTAGTCCGCGGATCGTAACTGAAGAGAATCGACCAACTAGAAAGAAGATGACGTGTGTAGAGTGCGATCACTGTCGTCGCAAGTTCTTGAAGAAGAGCAATCTCGCCGAACATCTGAAGCAGCATAGGCACAAATGCGCCGACTGTCCAAAGACCTTCAGTCTTCGGCGTTATCTGGTTTCCCACATCGAAAAGAATCATCGGCAGCAGATGTACGAGTGCAGCGTGTGCAAGTACAAGAGCAACAACAAAGGTACCCTCAAGAATCACTACATCCGACTGCACACAAGCAACTACGACTACGCGTGCGACACGTGCGGCAAGCAATTCAAGATAAAGAAGGCCCTGAATCACCATGTGAAGCAGAATCACAGCGAAGCTCCGCCGATCGTGTGCGACGTCTGCGGTCACTTCAGCAAGAACCTCCACGCCCTCAAGGCTCATATGAAGTATAGGCACTACAAGCCGGAGTTCGTCTGCCGGATATGTCGACGAGGTATGACCACGCAGGAGAATTTGGAACAGCATCTCATGTGGCACGAGACTAGGGAGAAGGTACTTTGTCCGACTTGCGGCAAGAGATTTCGGGGACGCGACCTGGACTCGCATATGAGAGTACACACCGGAGTGAAACCGTTCCCCTGCCCTGTCTGCGGAAAGTCTTTTCGACGGCAAACTGCTCAAGAGCAGCACGTGTTGATCCACACCGGAAAGAGACCCTACATTTGCGACATTTGCGGTCAAGCGTTCGCTCAAAAACCCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgaataa
- Protein Sequence
- MDGIKSEGIRDSHAFFIQTSSSIAEIISTENSKENRSVVRRLHYACDVCSFPCRTKGSLRKHMQLHKNTCRICNELFVSSEKLELHMVVHHGEPKYACKLCYSVVWNKPDMKKHFLVSHLDPFCNTCTACNKVFQSKYAIERHMYSQHTKLSVACTICRRVYNSFHALKAHTKLIHLKTGYQCEICKRRLLSADSLEAHLRRHEGTRNMDTYICTTCGETFLTKNKLNKHVIIHGDINPYVCPVCQKAFEKRANQVQHILTHMSNVYACDICGLRYSRRAALIWHRKMHPGPLGKLPVIPVIGIVSEVADPLNVEPNVQKLFDRIECEWTKREKSLTEHEGRLLEKINANLTREEISPRIVTEENRPTRKKMTCVECDHCRRKFLKKSNLAEHLKQHRHKCADCPKTFSLRRYLVSHIEKNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229186;
- 90% Identity
- iTF_01421711;
- 80% Identity
- -