Tbic019420.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium bicarinatum
Gene Symbol
PAXBP1
Assembly
GCA_011636605.1
Location
VBVP01007228.1:1976-7243[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-30 3.3e-26 93.1 3.4 2 272 362 571 361 573 0.91

Sequence Information

Coding Sequence
ATGATTCATGCAGCGCGAAAACGCAGACAAAAAGCAAGAGAATTAGGAACCGATTACATTCCTATTGAAGAGCAGAGCGATGATAAGGGCAAGTCAAGATTAATACGAGAGGAAGATCACGATCGAAGTGACGATGATGATTCTCAAGACCGATTAGACATGACTGTCAATACTGAAGCGCGtgataaagaaaagagaagagaagcaTTTCTTGCTTCTCAAGTTCcattaaaattttcagATAATGAAAGTGAGCACGAGAATGAAGAAGAGGAATGGGAAGCTCAACAAATACGAAAAGGTGTAACAGGTGCTCAGATTGCAGCAGCACAACAGGATTCTATGCTGCAACAACAATACACAATGGGTATGAATGTTAATCAGATGATCGGATCTGGCGTACCTTTAGAAATGGTATTAATGCCtgcaccgccaccgccaccatcTATTCAACCACCAGATCCAACAAAAATTGTACCTGTTACTCCGCAAGAAGTTGTGAACAGAATGCGCACAAGGTTAGACAATTTGAAAGAAGTGCATAGACGGCATCAGCAAGATCAGGAGCGTTTAGAGGGAGAATTACAGCAAACCAAGAAAGAATTGGATGAAAGTGAAGTTCGTACGCCGCATTACGCACAACGCTTCAGATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTTCCTCTGGTCATCGACTTGGAGCAACGCTGGTTAAATCTGTATGGCGAACGTTCAACCGAATTGATGGAACGAAGACGGCAAGATACGAGAGATCAGGCGGAAGAAATAACTACCGCAGCAAGAGGTCAAGCCATGAGAAGAGGACCGGAAGTGGAAGTACACGTACGACGAGCTACAGAAAGAGAAGGTAGAAGAGCCCGTCGCAGAAGAGCAAGAGAATTAGCTTCAAATATGCCAAAGCATATTGATGGCATGTCTAGTGACGACGAAGTCACTGAGCAACAAAATCTTGTATTTAAGCAAGCGAAAGacgaaattgataataattgcaaagatatattttctgaCGTTATGGAAGAGTATTGTACAGTACGTGGCATCCTTTCAAAATTTGAATCATGGAGAGAAACAGACATGGACGCCTACACAGAAGCttatgtatcattatgtttACCTAAAGTTATTTCACCCATTATTAGACTACAATTAGTTACATGGAATCCAATTATggAAAGCGCTGATCTAGAGAGAACAAAATGGTATAATACATTGCTTTTGTACGCTTTAGACAATAAAGAGACAGAGGAGTCATTGAAACGAGATCCAGATGTTAGACTGATACCGTCGACAATTGAAAAAATCGTGATACCAAAATTGACATctatTATCGAGAAAATATGGGATCCAATGTCAACGTCTCAGACATTACGTCTTGTAGGAGCTATAAATCGATTGATCAAAGAATATCCTAATTTGAACGACTCCAGCAAAcaattgaaaactttatttaacgctattttagataaaattaaggCTGCTATTGAAAATGATGTTTTTATACCTATCTTTCCAAAACAAGTTTGGGATACAAAACATCAATTCTTTCAAAGACAATTTGCGATGGCTGTCAAATTATTGcgtaatttattaagttgGCAAGGTCTCCTTGGagatgtacaattaaaaaatttagcattAGGCTCGCTTTTGAATCGTTATCTGCTTGCTGGATTACGAGTTTCTTGTCCAACTGATGCTTTATTTAAAGCAAACATGATTATGAGTACGCTACCAAGAGCATGGTTGCAAGGAGAAACTATTGAACATCTTAGAATGTTCGCCACACTTATTCAACAACTTAGTGAACAGTTGGATCAGGCAAACCCTGCACATAATGAGTCCTGGGAATACGCCAAGTCTATCCTGAAAATAATCAAGCCCTTGTAA
Protein Sequence
MIHAARKRRQKARELGTDYIPIEEQSDDKGKSRLIREEDHDRSDDDDSQDRLDMTVNTEARDKEKRREAFLASQVPLKFSDNESEHENEEEEWEAQQIRKGVTGAQIAAAQQDSMLQQQYTMGMNVNQMIGSGVPLEMVLMPAPPPPPSIQPPDPTKIVPVTPQEVVNRMRTRLDNLKEVHRRHQQDQERLEGELQQTKKELDESEVRTPHYAQRFRYYQELRGYVTDLVECLDEKLPLVIDLEQRWLNLYGERSTELMERRRQDTRDQAEEITTAARGQAMRRGPEVEVHVRRATEREGRRARRRRARELASNMPKHIDGMSSDDEVTEQQNLVFKQAKDEIDNNCKDIFSDVMEEYCTVRGILSKFESWRETDMDAYTEAYVSLCLPKVISPIIRLQLVTWNPIMESADLERTKWYNTLLLYALDNKETEESLKRDPDVRLIPSTIEKIVIPKLTSIIEKIWDPMSTSQTLRLVGAINRLIKEYPNLNDSSKQLKTLFNAILDKIKAAIENDVFIPIFPKQVWDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDVQLKNLALGSLLNRYLLAGLRVSCPTDALFKANMIMSTLPRAWLQGETIEHLRMFATLIQQLSEQLDQANPAHNESWEYAKSILKIIKPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01423655;
90% Identity
iTF_00016033; iTF_00181958; iTF_01476168; iTF_00417554; iTF_01476914; iTF_00181299; iTF_01477560; iTF_00182617; iTF_00015366; iTF_01423655;
80% Identity
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