Basic Information

Insect: Tetragonula davenporti
Gene Symbol: -
Assembly: GCA_010645165.1
Location: WIUW01015140.1:533-4322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.13 14 6.6 2.3 1 23 207 229 207 229 0.94

2 18 0.0003 0.033 14.9 1.4 2 23 265 286 264 286 0.98

3 18 8.1e-05 0.0089 16.7 1.0 1 23 431 453 431 453 0.94

4 18 0.042 4.6 8.1 0.3 2 23 457 478 456 478 0.95

5 18 0.0049 0.54 11.1 0.7 3 23 556 577 555 577 0.94

6 18 0.00034 0.037 14.7 0.7 1 21 583 603 583 607 0.92

7 18 0.00089 0.098 13.4 3.2 2 23 687 708 686 708 0.95

8 18 0.00018 0.019 15.6 4.2 1 23 770 792 770 792 0.96

9 18 0.00022 0.025 15.3 0.7 1 20 797 816 797 818 0.94

10 18 0.038 4.2 8.3 0.6 2 23 829 850 829 850 0.97

11 18 2.3e-05 0.0025 18.4 0.6 2 23 889 910 888 910 0.97

12 18 2.1e-05 0.0023 18.5 1.6 1 23 915 937 915 937 0.95

13 18 0.00012 0.013 16.2 2.9 1 23 943 965 943 965 0.98

14 18 3.7e-06 0.0004 20.9 0.4 1 23 981 1003 981 1003 0.95

15 18 3e-07 3.3e-05 24.3 0.6 1 23 1009 1031 1009 1031 0.99

16 18 3.2e-05 0.0036 17.9 0.2 1 23 1037 1059 1037 1059 0.97

17 18 0.00012 0.013 16.1 4.1 1 23 1065 1087 1065 1087 0.96

18 18 0.0078 0.86 10.4 0.3 1 20 1093 1112 1093 1114 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.13	14	6.6	2.3	1	23	207	229	207	229	0.94
2	18	0.0003	0.033	14.9	1.4	2	23	265	286	264	286	0.98
3	18	8.1e-05	0.0089	16.7	1.0	1	23	431	453	431	453	0.94
4	18	0.042	4.6	8.1	0.3	2	23	457	478	456	478	0.95
5	18	0.0049	0.54	11.1	0.7	3	23	556	577	555	577	0.94
6	18	0.00034	0.037	14.7	0.7	1	21	583	603	583	607	0.92
7	18	0.00089	0.098	13.4	3.2	2	23	687	708	686	708	0.95
8	18	0.00018	0.019	15.6	4.2	1	23	770	792	770	792	0.96
9	18	0.00022	0.025	15.3	0.7	1	20	797	816	797	818	0.94
10	18	0.038	4.2	8.3	0.6	2	23	829	850	829	850	0.97
11	18	2.3e-05	0.0025	18.4	0.6	2	23	889	910	888	910	0.97
12	18	2.1e-05	0.0023	18.5	1.6	1	23	915	937	915	937	0.95
13	18	0.00012	0.013	16.2	2.9	1	23	943	965	943	965	0.98
14	18	3.7e-06	0.0004	20.9	0.4	1	23	981	1003	981	1003	0.95
15	18	3e-07	3.3e-05	24.3	0.6	1	23	1009	1031	1009	1031	0.99
16	18	3.2e-05	0.0036	17.9	0.2	1	23	1037	1059	1037	1059	0.97
17	18	0.00012	0.013	16.1	4.1	1	23	1065	1087	1065	1087	0.96
18	18	0.0078	0.86	10.4	0.3	1	20	1093	1112	1093	1114	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGGAGAGTGCCTGAGTCACGAGGAAGAAGACATTAAAGTTATCATACCCATTAACGAAGGAATGTTAAAACACGAAAACCAGGATAACGAGtgtctcgaaaatatttcaacggtGGAGcatgattatatattacagCAGGAATGTGTACTATCTAATGGAAATCAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAACAAGAGCAGCATCACTATCAACATCAACTCACGTCCGGAGAATCGTTTCAACGCGAAGATTACACAGAGTACGTAGATCTGTTGGTAAAGGCAGCGGATGCAACGATAAAACAGGACGAAgcgaaagacgaagaagaaaaattggatGTTACGAACGCAGATCCCATTCAGCCAGAAGCAGATTCTCAGTAtcaaaatgaaacgagaagaagCAAACGTAAATTGGTTCGACGAAGCAACTGCGAGACGAAACGGGATTCCGACGAggagaattattttgaaaatttgaatctaAGCTCAAGATTGAAGAAAGACCAATCTTCCGATCAGtcggagaaaatttttctatgttATCTGTGCGACAAGGAGTTCTTGTCAAAGAACGTTTTGAAGGAGCATATGCATTCGCACGAAGAAGTCCGAAAGGTACTGTCTCTGAAAAGAACGCCACCAGACACGCCGCAAAAAGACAGTTACAATGTTGCGAAATCACCCCCGTCGGGTAAAAGATCAAACAAATGCCCGTACTGTGGtaaacagtatatatatataacctcGTTTAGCAAACATTTGAAgaaacacgagagagagaaagaggagggaaaagaagaatcgaTGCCCCTGGAAATATCATTCCACGAGGACGAACACAGTTTAGATCTTGACGATTACAAGGATGCACGTCGAAATTTGAATACCACCGAGTATCGGAAGAAAGTCAAACAAAAGGAGGAGACTGGTCGAGAGGACcacgaagaggaggaagaacaAGGGAACGCGGTGAAAGGTTGTTGTAGTGACGCTGGCGATGGCGATGGCGATGGCGGAGGCGGAGGTAGTGGAGGAAGGGAaggaaacaacaacaacgacgacgacgacgatgacgacaacgacgacaacgacgacgacgacgacgacgacgacgacaagtACGACGACTATGAAATCGGCAAACGACTGGGTAACTCGAATAGCAAAGAGGAACAGAAAAGTCGCACTGTTCGTACGAAAACGTTCGCGTGCGACAAGTGCGCAAAGAAATTTCCTACGAAACGCAACTTGCGAAAGCACGCCGTTTCGCATGCTGTTCTCAATTGCAGCGTATGCGACGACGAGTTCGATTCGCTggagaaattgagaaatcatCGTGCGAAACACGTGGTCGAAGGTGTGTTGACCGAGCAAGAACTCGAGATGGGCAGAGAGTACGCGATCAAGAAGGAGACCGTTGGGTGCGAGACGGAGAGTAAAGAAAGCGCGGGAAACGAAAGACGTGGGATGAAAGACGAACCAGCGGCAGGATTGTTGGAGATTGAGAATAATTCGTCAAAGAAAAACGACAGAAATTCAGAGATTCGTCGTCGTTCATCGGGCATCATCAGTCACGGCTGTAAGATGTGTTCCCTACAATTCGCAACGAAGGAAATGTTGCAAAAGCATACGGAGCAACAACACGAACGCGTGAAAGCCTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTCTGCGTAATCATCTTATAGCCACTAATCACAAAACTTTCCTTCACGGGCAAGAATACGATCCTAACAAACGGATTAAGAGAGTGGCGGCGAGAGCCGCGCAAAAGATTATCGACAAGATTAAAACGGAAGATGGTTTGGAAGACTACGACGAGGAAGAGGAGCACAACAACGAGAGAATCAATCGCGTTAATTCTACGGATGGTAATTACACTCGGAACAAGCGAGAAATCTCGTCGCAGAAAAGGCACAGTTACAAGAAGGAATTGGAATGTGCGAGTTGCAACAAGAGATGCAGTTCGAAGCAGTCGTTGACGAAACATATGGAACAACATGTAAAGGACGAGCAACAACGAGCGATTCTCAAGTCGGagacaaacaaacaaaaacaaTCGGCCGAGAGGAAAGAATGGCAAAAGGACTGTGGTAACAACGAGAAGATCTGCCAGAAGGATAACAACAGAGACGACGATTACGATTCGGATTTCGAAAGTGGCTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAGAAACGATACAGCACGAAAAAGTCGTTGTTACGTCATCAATTGTTGCACGAAGAGCCAAATTTCGAGTGTGACATTTGCAACGTCAAGTTCTACCGCAAGGACAAGTTGAAGGCTCATTACGACAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTCGAGAACAATGAGATTCTACGAGAGCACAGATCGAAACATGTTACCGAGGGTATTCTCACGGAGGAGGACTTGAGAGACATCGAGCCGCGACCCGAGGAAAAGAAACCCGGCGAAAAAATCGGTAGAAAGAGAAGAACCGACATCGTCGGTTTAGAGTGTACGGAATGTAACAAGCAGTACACGTCGAGAAAAGGGCTTTTACGACACATTCAAGTCCACGAAGGGAAAAAATACCTGTGCGACATATGTCCAAAAAAGTTTTACAGAAGGGAACATTTAAAGATACACGTGGCCAAACATAATATGATCAAACCGTACAAGTGTACGCGGTGCACAAAGCGTTTCATCAAAGAGGAACAACTAACCAATCATTTGTCAAAACATGATCGAACTttcaagaaaaacaaagaaaccgACAGCTCGAAAAGATTCCTTTGCGAAATCTGTTCGAAGAGTTTCACGCAATCGACGACTCTGATCGCGCATCTTAGAGCGCATAACGGCATAAAACCATACGTCTGCGAGGTTTGCTCGCGACCGTTCACCACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAGGAACGGCCGTACATTTGTCAATATTGTTCACGAGCGTTTGCCAGAGCCGACACGCTCGCCAATCATTTGACTTCCCACACAGGCGAGGCCAAGTATCATTGCAAATACTGTCCAAAAAATTTCCGTCGTCTGAAATCGCTGAAGGAGCACGTTTTCATTCACACCGGTCAAAGACCTTATGCCTGTCCAACTTGCGATCGACGGTTTAACAACAATGGAAGTCGGTACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCATTGTCGGCGCAGCAAGTACAAACTCAACAAACTCCTCAGACTCAACAAACAAGAGTGCTGCAACAGACCACTCTCGAACAAGGGCAAATAGTGAAACCGcagaatattaaaactattacAATCACTAAACAACCTGAATCGGTCACTACTCAACAAACGGTTATGCAGCTTCAGGAAATATTGATGCCTTTGATCCTTCCTCTCACGGTCACTCTTACCGACGTTGGTGAAGAAGTAATATTACCAGAGGGAACCAAGATATTTACCACGTCGTAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIPINEGMLKHENQDNECLENISTVEHDYILQQECVLSNGNQEQEQEQEQEQEQEQEQEQEQEQQEQHHYQHQLTSGESFQREDYTEYVDLLVKAADATIKQDEAKDEEEKLDVTNADPIQPEADSQYQNETRRSKRKLVRRSNCETKRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRTPPDTPQKDSYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDDYKDARRNLNTTEYRKKVKQKEETGREDHEEEEEQGNAVKGCCSDAGDGDGDGGGGGSGGREGNNNNDDDDDDDNDDNDDDDDDDDDKYDDYEIGKRLGNSNSKEEQKSRTVRTKTFACDKCAKKFPTKRNLRKHAVSHAVLNCSVCDDEFDSLEKLRNHRAKHVVEGVLTEQELEMGREYAIKKETVGCETESKESAGNERRGMKDEPAAGLLEIENNSSKKNDRNSEIRRRSSGIISHGCKMCSLQFATKEMLQKHTEQQHERVKAYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEEHNNERINRVNSTDGNYTRNKREISSQKRHSYKKELECASCNKRCSSKQSLTKHMEQHVKDEQQRAILKSETNKQKQSAERKEWQKDCGNNEKICQKDNNRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQQVQTQQTPQTQQTRVLQQTTLEQGQIVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_01418480; iTF_01420401; iTF_01421056; iTF_01419127;
80% Identity: -