Basic Information

Insect: Tetragonula mellipes
Gene Symbol: -
Assembly: GCA_011634685.1
Location: WINE01004185.1:13272-17055[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.11 33 6.6 2.3 1 23 205 227 205 227 0.94

2 18 0.00027 0.078 14.9 1.4 2 23 263 284 262 284 0.98

3 18 0.00011 0.033 16.1 0.9 1 23 428 450 428 450 0.94

4 18 0.13 38 6.4 0.3 2 23 454 475 453 475 0.95

5 18 0.0044 1.3 11.1 0.7 3 23 553 574 552 574 0.94

6 18 0.0003 0.088 14.7 0.7 1 21 580 600 580 604 0.92

7 18 0.0008 0.23 13.4 3.2 2 23 684 705 683 705 0.95

8 18 0.00016 0.046 15.6 4.2 1 23 767 789 767 789 0.96

9 18 0.0002 0.059 15.3 0.7 1 20 794 813 794 815 0.94

10 18 0.034 9.9 8.3 0.6 2 23 826 847 826 847 0.97

11 18 2e-05 0.006 18.4 0.6 2 23 886 907 885 907 0.97

12 18 1.9e-05 0.0054 18.5 1.6 1 23 912 934 912 934 0.95

13 18 0.0001 0.03 16.2 2.9 1 23 940 962 940 962 0.98

14 18 3.3e-06 0.00096 20.9 0.4 1 23 978 1000 978 1000 0.95

15 18 2.7e-07 7.8e-05 24.3 0.6 1 23 1006 1028 1006 1028 0.99

16 18 2.9e-05 0.0085 17.9 0.2 1 23 1034 1056 1034 1056 0.97

17 18 0.00011 0.031 16.1 4.1 1 23 1062 1084 1062 1084 0.96

18 18 0.007 2 10.4 0.3 1 20 1090 1109 1090 1111 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.11	33	6.6	2.3	1	23	205	227	205	227	0.94
2	18	0.00027	0.078	14.9	1.4	2	23	263	284	262	284	0.98
3	18	0.00011	0.033	16.1	0.9	1	23	428	450	428	450	0.94
4	18	0.13	38	6.4	0.3	2	23	454	475	453	475	0.95
5	18	0.0044	1.3	11.1	0.7	3	23	553	574	552	574	0.94
6	18	0.0003	0.088	14.7	0.7	1	21	580	600	580	604	0.92
7	18	0.0008	0.23	13.4	3.2	2	23	684	705	683	705	0.95
8	18	0.00016	0.046	15.6	4.2	1	23	767	789	767	789	0.96
9	18	0.0002	0.059	15.3	0.7	1	20	794	813	794	815	0.94
10	18	0.034	9.9	8.3	0.6	2	23	826	847	826	847	0.97
11	18	2e-05	0.006	18.4	0.6	2	23	886	907	885	907	0.97
12	18	1.9e-05	0.0054	18.5	1.6	1	23	912	934	912	934	0.95
13	18	0.0001	0.03	16.2	2.9	1	23	940	962	940	962	0.98
14	18	3.3e-06	0.00096	20.9	0.4	1	23	978	1000	978	1000	0.95
15	18	2.7e-07	7.8e-05	24.3	0.6	1	23	1006	1028	1006	1028	0.99
16	18	2.9e-05	0.0085	17.9	0.2	1	23	1034	1056	1034	1056	0.97
17	18	0.00011	0.031	16.1	4.1	1	23	1062	1084	1062	1084	0.96
18	18	0.007	2	10.4	0.3	1	20	1090	1109	1090	1111	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGGAGAGTGCCTGAGTCACGAGGAAGAAGACATTAAAGTTATCATACCCATTAACGAAGGAATGTTAAAACACGAAAACCAGGATAACGAGTGTCTGGAAAGTATTTCAACGGTGGAGCATGATTATATATTACAGCAGGAATGTGTGCTATCTAATGGAAATCAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAACAAGAGCAGCATCACTATCAACATCAACTCACGTCCGGAGAATCGTTTCAACGCGAAGATTACACAGAGTACGTAGATCTGTTGGTAAAGGCAGCGGATGCAACGATAAAACAGGACGAAgcgaaagacgaagaagaaaaattggataTTACGAACGCAGATCCCATTCGGCCAGAAGCAGATTCTCAGTatcaaaatgaaacgagaagaagCAAACGTAAATTGGTTCGACGAAGCAACTGCGAGACGAAACGGGATTCCGACGAggagaattattttgaaaatttgaatctaaGCTCAAGATTGAAGAAAGACCAATCTTCCGATCAGTcggagaaaatttttctatgttATCTGTGCGACAAGGAGTTCTTGTCAAAGAACGTTTTGAAGGAGCATATGCATTCGCACGAAGAAGTCCGAAAGGTACTGTCTCTGAAAAGAACGCCACCAGACACGCCGCAAAAAGACAGTTACAACGTTGCGAAATCACCCCCGTCGGGTAAAAGATCAAACAAATGCCCGTACTGTGgtaaacagtatatatatataacctcgTTTAGTAAACATTTGAagaaacacgagagagagaaagaggagggaaaagaagaatCGATGCCCCTGGAAATATCATTCCACGAGGACGAACACAGTTTAGATCTTGACGATTACAAGGATGCACGTCGAAATTTGAATACCACCGAGTATCGGAAGAAAGTCAAACAAAAGGAGGAGACTGGTCGAGAGGACCGCGAAGAGGAAGAACAAGGGAACGCGGTGAAAGGTTGTTGTAGTGACGctggcgatggcgatggcgatggcgatggcggAGGCGGAGGTAGTGGAGGAAGGGAaggaaacaacaacaacgacgacaacgacgacgacgacgacgacgacgacgacgacgacaacgacgacgacaagtACGACGACTATGAAATCGGCAAACGACTGGGTAACTCGAATAGCAAAGAGGAACAGAAAAGTCGCACTGTTCGTACGAAAACGTTCGCGTGCGACAAGTGCGCAAAGAAATTTCCTACGAGACGCAACTTGCGAAAGCACGCCGTTTCGCATGCTGTTCTCAATTGCAGCGTATGCGAAGACGAGTTCGATTCGCtggagaaattgagaaatcatCGTGCGAAACACGTGGTCGAAGGTGTGTTGACCGAGCAAGAACTCGAGATGGGCAGAGAGTACGCGATCAAGAAGGAGACCGTTGGGTGCGAGACGGAGAGTAAAGAAAGCGCGGGAAACGATCGTGGGATGAAAGACGAACCAGCGGCAGGAGGATTGTTGGAGATTGAGAATAATTCGTCAAAGAAAAACGACAGAAATTCAGAGATTCGTCGTCGTTCATCGGGCATCGTCAGTCACGGCTGTAAGATGTGTTCCCTACAATTCGCAACGAAGGAAATGTTGCAAAAGCACACGGAGCAACAACACGAACGCGCGAAAGCCTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTCTGCGTAATCATCTTATAGCCACTAATCACAAAACTTTCCTTCACGGGCAAGAATACGATCCTAACAAACGGATTAAGAGAGTGGCGGCGAGAGCCGCGCAAAAGATTATCGACAAGATTAAAACGGAAGATGGTCTGGAAGACTACGACGAGGAAGAGGAGCACAACAACGAGAGAATCAATCGCGTTAATTCTACGGATGGTAATTACACTCGGAACAAGCGAGAAATCTCGTCGCAGAAAAGGCACGGTTACAAGAAGGAATTGGAATGTGCGAGTTGCAACAAGAGATGCAGTTCGAAGCAGTCGTTGACGAAACATATGGAACAACATGTAAAGGACGAGCAACAACGAGCGATTCTCAAGTCGgagacaaacaaacaaaaacaaTCGGCCGAGAGGAAAGAATGGCAAAAGGACTGTGGTAACAACGAGAAGATCTGCCAGAAGGATAACAACAGAGACGACGATTACGATTCGGATTTCGAAAGTGGCTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAGAAACGATACAGCACGAAAAAGTCGTTGTTACGTCATCAATTGTTGCACGAGGAGCCAAATTTCGAGTGTGACATTTGCAACGTCAAGTTCTACCGCAAGGACAAGTTGAAGGCTCATTACGACAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTCGAGAACAATGAGATTCTACGAGAGCACAGATCGAAACACGTTACCGAGGGTATTCTCACGGAGGAAGACTTGAGAGACATCGAGCCGCGACCCGAGGAAAAGAAACCCGGCGAAAAAATCGGTAGAAAGAGAAGAACCGACATCGTCGGTTTAGAGTGTACGGAATGTAACAAGCAGTACACGTCGAGAAAAGGGCTTTTGCGACACATTCAAGTCCACGAAGGGAAAAAATACCTGTGCGACATATGTCCAAAAAAGTTTTACAGAAGGGAACATTTAAAGATACACGTGGCCAAACATAATATGATCAAACCGTACAAGTGTACGCGGTGCACAAAGCGTTTCATCAAAGAGGAACAGCTAACCAATCATTTGTCAAAACATGATCGAACTttcaagaaaaacaaagaaaccgACAGCTCGAAAAGATTCCTTTGCGAAATCTGTTCGAAGAGTTTCACGCAATCGACGACTCTGATCGCGCATCTTAGAGCGCATAACGGCATAAAACCATACGTCTGCGAGGTTTGCTCGCGACCGTTCACCACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAGGAACGGCCGTACATTTGTCAATATTGTTCACGAGCGTTTGCCAGAGCCGACACGCTCGCCAATCATTTGACTTCCCACACAGGCGAGGCCAAGTATCATTGCAAATACTGTCCAAAAAATTTCCGTCGTCTGAAATCGCTGAAGGAGCACGTTTTCATTCACACTGGTCAAAGACCTTATGCCTGTCCAACTTGCGATCGACGGTTTAACAACAATGGAAGTCGGTACGCTCATAGTAAAAGGTGCAAACAAACTTTTGTGCAAAATCAGAATCGTGCCCAAGCATTGTCGGCGCAGCAAGTACAAACTCAACAAACTCCTCAGACTCAACAAACAAGAGTGCTGCAACAGACCACTCTCGAACAAGGGCAAATAGTGAAACCGCagaatattaaaactattaccATCACTAAACAACCTGAATCGGTCACTACTCAACAAACGGTTATGCAGCTTCAGGAAATATTGATGCCTTTGATCCTTCCTCTCACGGTCACTCTTACCGACGTTGGTGAAGAAGTAATATTACCAGAGGGAACCAAGATATTTACCACGTCGTAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIPINEGMLKHENQDNECLESISTVEHDYILQQECVLSNGNQEQEQEQEQEQEQEQEQEQEQQEQHHYQHQLTSGESFQREDYTEYVDLLVKAADATIKQDEAKDEEEKLDITNADPIRPEADSQYQNETRRSKRKLVRRSNCETKRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRTPPDTPQKDSYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDDYKDARRNLNTTEYRKKVKQKEETGREDREEEEQGNAVKGCCSDAGDGDGDGDGGGGGSGGREGNNNNDDNDDDDDDDDDDDNDDDKYDDYEIGKRLGNSNSKEEQKSRTVRTKTFACDKCAKKFPTRRNLRKHAVSHAVLNCSVCEDEFDSLEKLRNHRAKHVVEGVLTEQELEMGREYAIKKETVGCETESKESAGNDRGMKDEPAAGGLLEIENNSSKKNDRNSEIRRRSSGIVSHGCKMCSLQFATKEMLQKHTEQQHERAKAYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEEHNNERINRVNSTDGNYTRNKREISSQKRHGYKKELECASCNKRCSSKQSLTKHMEQHVKDEQQRAILKSETNKQKQSAERKEWQKDCGNNEKICQKDNNRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQQVQTQQTPQTQQTRVLQQTTLEQGQIVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_01419770;
80% Identity: -