Basic Information

Insect: Tetragonula clypearis
Gene Symbol: -
Assembly: GCA_010645135.1
Location: WIUT01001450.1:24612-28477[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.13 21 6.6 2.3 1 23 209 231 209 231 0.94

2 18 0.00031 0.05 14.9 1.4 2 23 268 289 267 289 0.98

3 18 3.8e-05 0.0061 17.7 1.6 1 23 435 457 435 457 0.94

4 18 0.15 24 6.4 0.3 2 23 461 482 460 482 0.95

5 18 0.68 1.1e+02 4.3 2.9 3 23 562 583 561 583 0.93

6 18 0.00035 0.056 14.7 0.7 1 21 589 609 589 613 0.92

7 18 0.00092 0.15 13.4 3.2 2 23 694 715 693 715 0.95

8 18 0.00018 0.029 15.6 4.2 1 23 778 800 778 800 0.96

9 18 0.00023 0.037 15.3 0.7 1 20 805 824 805 826 0.94

10 18 0.039 6.3 8.3 0.6 2 23 837 858 837 858 0.97

11 18 2.4e-05 0.0038 18.4 0.6 2 23 897 918 896 918 0.97

12 18 2.1e-05 0.0034 18.5 1.6 1 23 923 945 923 945 0.95

13 18 0.00012 0.019 16.2 2.9 1 23 951 973 951 973 0.98

14 18 3.8e-06 0.00061 20.9 0.4 1 23 989 1011 989 1011 0.95

15 18 3.1e-07 4.9e-05 24.3 0.6 1 23 1017 1039 1017 1039 0.99

16 18 3.3e-05 0.0053 17.9 0.2 1 23 1045 1067 1045 1067 0.97

17 18 0.00012 0.02 16.1 4.1 1 23 1073 1095 1073 1095 0.96

18 18 0.0081 1.3 10.4 0.3 1 20 1101 1120 1101 1122 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.13	21	6.6	2.3	1	23	209	231	209	231	0.94
2	18	0.00031	0.05	14.9	1.4	2	23	268	289	267	289	0.98
3	18	3.8e-05	0.0061	17.7	1.6	1	23	435	457	435	457	0.94
4	18	0.15	24	6.4	0.3	2	23	461	482	460	482	0.95
5	18	0.68	1.1e+02	4.3	2.9	3	23	562	583	561	583	0.93
6	18	0.00035	0.056	14.7	0.7	1	21	589	609	589	613	0.92
7	18	0.00092	0.15	13.4	3.2	2	23	694	715	693	715	0.95
8	18	0.00018	0.029	15.6	4.2	1	23	778	800	778	800	0.96
9	18	0.00023	0.037	15.3	0.7	1	20	805	824	805	826	0.94
10	18	0.039	6.3	8.3	0.6	2	23	837	858	837	858	0.97
11	18	2.4e-05	0.0038	18.4	0.6	2	23	897	918	896	918	0.97
12	18	2.1e-05	0.0034	18.5	1.6	1	23	923	945	923	945	0.95
13	18	0.00012	0.019	16.2	2.9	1	23	951	973	951	973	0.98
14	18	3.8e-06	0.00061	20.9	0.4	1	23	989	1011	989	1011	0.95
15	18	3.1e-07	4.9e-05	24.3	0.6	1	23	1017	1039	1017	1039	0.99
16	18	3.3e-05	0.0053	17.9	0.2	1	23	1045	1067	1045	1067	0.97
17	18	0.00012	0.02	16.1	4.1	1	23	1073	1095	1073	1095	0.96
18	18	0.0081	1.3	10.4	0.3	1	20	1101	1120	1101	1122	0.89

Sequence Information

Coding Sequence: ATGGAGGTGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGGAGAGTGTCTGAGTCACGAGGAAGAAGACATTAAAGTTATCATACCCATTAACGAAGGAATGTTGAAACACGAGAACCAGGAGGATAACGAGTGTCTCGAGAATATTTCAACGGTGGAGcatgattatatattacagCAGGAATGTGTACTATCTAATGGAAATGAacaggaagaggaagaggaacaggaagaggaagaggaacaggaacaacaacaacaacaacaacaacaagagCAGCATCACTATCAACATCAACTTACGTCCGGAGAATCGTCGTTTCAACGCGAAGATTACACAGAGTATGTCGATCTATTGGTAAAGGCAGCGGATGCAACGATAAAACAGGACGAAgcgaaagacgaagaagaaaaattagacgTTACGAACGCAGATTCCATTGAGCCAGAAGCAGATTCTCagtgtgaaaatgaaacgagaagaagcAAACGTAAATTGGTTCGACGAAGCAACTGCGAGACGAAACGGGATTCCGACGAggagaattattttgaaaatttgaatctaAGCTCGAGATTGAAGAAGGACCAATGTTCCGCAGATCAGTCGGAGAAAATTTTCCTATGTTATCTGTGCGACAAGGAGTTCCTGTCGAAGAACGTTTTGAAGGAGCATATGCATTCGCACGAAGAAGTGCGCAAGGTACTGTCTCTGAAAAGAGACCTGCCGCCAGACACGCCGCAAAAAGACAGTTACAACGTTGCGAAATCACCCCCGTCGGGTAAAAGATCAAACAAATGCCCGTACTGTGGtaaacagtatatatatataacctcGTTTAGTAAACATTTGAAgaaacacgagagagagaaagaggagggaaaagaagaatcgaCCATGCCCCTGGAAATATCATTCCACGAGGACGAACACAGTTTAGATCTTGACGATTACAAGGACGCGCGTCGAAATTTCAACACCACCGAGTATCGGAAGAAAGTCAAGCAAAAGGAGCAGACTGGTCAAGAGGACCACGCagaggaagaagaacaagGGAACGCGGTGAAAGGTTGTTGCAGCGACGCTGGTGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGGAGGTAGTGGAGGAAGGGAaggaaacaacaacaacgacgacgacggcgacggcgacgacgacgacgacgacgacgacgacgagtacGATGACTATGAAACCGGCAAACGACTGGGTAGTTCGAGTAGCAAAGAGGAACAGAAAAGTCGCACCGTTCGTGCGAAAACGTTATTTGCGTGCGACAAGTGcgcaaagaaattttctacgaaacgcAACTTGCGAAAGCACGCCGTTTCGCACGCTGTTCTCAATTGTAGCGTGTGCGAAGACGAGTTCGACTCGCTggagaaattgagaaatcatCGTGCGAAACACGTGGTCGAAGGTGTGTTGACCGAGCAAGAACTCGAGATGGATAAAGAGTACGCGATCAAGAAGGAGGCCCTTGGCTGCGAGACGGAGAGTAAAGAAAGCGCGGGAAACGATCGTGCGATGAAAGACCACGAAAGACCAGCGGCAGCGTTGTTGTTGCAGATTGAGAGTAATTCGTCAAAGAAAAACGATAGAAATTCCGAGATTCatcgtcgttcgtcgtcggGGATCAGTCACGGCTGTAAGACGTGTTGCCAACAATTCGCAACGAAGGAAATGTTGCAAAAGCACACGGAGCAACAACACGAACGTGCGAAAGCCTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTCTGCGTAATCATCTTATAGCCACTAATCACAAAACTTTCCTTCACGGGCAAGAATACGATCCTAACAAACGGATCAAGAGAGTGGCCGCGAGAGCCGCGCAAAAGATTATCGACAAGATTAAAACGGAAGACTACGGTTTGGAAGACTACGACGAGGAAGAGGAGCGCGACAACCAGCGAGTCAATCGCGTTAATTCTACGGATGGTAATTACACTCGGAACAAGCGAGAAATCTCGTCGCAGAAAAGGCACAACTACAAGAAGGATTTGGAATGCGCGAGTTGCAACAAAAGATGCAGTTCGAAGCAGTCGTTGACGAAACACATGGAACAACATGTAAAGGACGAGCAGCAACAACGAGCGATTCTCAAGTCGGAGAAACAGCAAAAACAATCGGCGGAGAGGAAAGAGTGGCAAAAGGAGTGCGGTAAAGACAACGAGAAGATCTGCCAGAGGGATAGCAACAGAGACGACGATTACGATTCGGATTTCGAGAGTGGCTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAGAAACGATACAGCACGAAAAAGTCGTTGTTACGTCATCAGTTGTTGCACGAGGAGCCAAATTTCGAGTGTGACATTTGCAACGTCAAGTTCTACCGCAAGGACAAGTTGAAGGCTCATTATGACAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAACATCTGCGGCGATACGTTCGAGAACAACGAGATTCTACGAGAACACAGATCGAAACACGTTACCGAGGGTATTCTCACGGAGGAAGACTTGAGAGACATCGAGCCGCGACCCGAGGAGAAGAAACCCGGCGAAAAAATCGGCCGAAAGAGAAGAACCGACATCGTCGGTTTAGAGTGTACGGAGTGTAACAAGCAGTACACGTCGAGAAAAGGCCTTTTACGCCACATTCAAGTCCACGAAGGGAAGAAATACCTGTGCGACATATGTCCGAAAAAGTTCTACAGAAGGGAACATTTGAAGATACACGTGGCCAAACATAATATGATCAAACCGTACAAGTGCACGCGGTGCACCAAGCGTTTCATCAAAGAGGAACAACTAACGAATCATTTGTCGAAACACGATCGCACTTTcaagaagaacaaagaaacCGACAGCTCGAAAAGATTCCTTTGCGAAATCTGTTCGAAGAGTTTCACGCAATCGACGACTCTGATCGCGCATCTTAGAGCGCATAACGGCATAAAACCGTACGTCTGCGAGGTTTGCTCGCGACCGTTCACCACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAGGAACGGCCCTACATTTGTCAATATTGTTCACGAGCGTTTGCCAGAGCCGACACGCTCGCCAATCATTTGACTTCCCACACGGGCGAGGCCAAGTATCACTGCAAGTACTGTCCAAAAAATTTCCGTCGTCTGAAATCGCTGAAGGAGCACGTTTTCATTCACACTGGCCAAAGACCTTATGCCTGTCCAACTTGTGATCGACGCTTTAACAACAATGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCATTGTCGGCGCAGCAAGTACAAACTCAACAACAAACTCCTCAGACTCAACAACAAACGAGAGTGCTGCAACAGACCACTATCGAACAAGGGCAATTAGTGAAACCGcagaatattaaaactattacCATCACTAAACAACCTGAATCGGTCACCACTCAACAAACGGTTATGCAGCTTCAGGAAATATTGATGCCTTTGATCCTTCCTCTCACGGTCACTCTTACCGACGTTGGCGAAGAAGTTATATTACCAGAGGGAACCAAGATATTTACTACGTCGTAA
Protein Sequence: MEVVIDQTIATEQTSGECLSHEEEDIKVIIPINEGMLKHENQEDNECLENISTVEHDYILQQECVLSNGNEQEEEEEQEEEEEQEQQQQQQQQEQHHYQHQLTSGESSFQREDYTEYVDLLVKAADATIKQDEAKDEEEKLDVTNADSIEPEADSQCENETRRSKRKLVRRSNCETKRDSDEENYFENLNLSSRLKKDQCSADQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRDLPPDTPQKDSYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESTMPLEISFHEDEHSLDLDDYKDARRNFNTTEYRKKVKQKEQTGQEDHAEEEEQGNAVKGCCSDAGDGDGDGDGDGDGGGSGGREGNNNNDDDGDGDDDDDDDDDEYDDYETGKRLGSSSSKEEQKSRTVRAKTLFACDKCAKKFSTKRNLRKHAVSHAVLNCSVCEDEFDSLEKLRNHRAKHVVEGVLTEQELEMDKEYAIKKEALGCETESKESAGNDRAMKDHERPAAALLLQIESNSSKKNDRNSEIHRRSSSGISHGCKTCCQQFATKEMLQKHTEQQHERAKAYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDYGLEDYDEEEERDNQRVNRVNSTDGNYTRNKREISSQKRHNYKKDLECASCNKRCSSKQSLTKHMEQHVKDEQQQRAILKSEKQQKQSAERKEWQKECGKDNEKICQRDSNRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQQVQTQQQTPQTQQQTRVLQQTTIEQGQLVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_01419770;
80% Identity: -