Tmol013364.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014542.1:898843-904562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.1e-06 0.00035 21.5 0.5 2 23 145 166 144 166 0.97 2 16 0.00029 0.025 15.6 4.1 1 23 171 193 171 193 0.97 3 16 0.00033 0.028 15.5 5.2 1 23 199 221 199 221 0.97 4 16 0.0026 0.22 12.6 0.6 1 19 227 245 227 248 0.94 5 16 2.1e-05 0.0018 19.2 0.7 1 23 255 277 255 277 0.96 6 16 0.0055 0.47 11.6 0.6 1 23 470 492 470 492 0.97 7 16 0.00011 0.0091 17.0 7.4 1 23 498 520 498 520 0.97 8 16 7.7e-06 0.00065 20.6 2.6 1 23 526 548 526 548 0.98 9 16 2.3e-05 0.0019 19.1 0.7 1 23 554 577 554 577 0.93 10 16 0.017 1.4 10.1 2.0 1 23 589 611 589 611 0.94 11 16 0.00034 0.029 15.4 8.1 1 23 617 639 617 639 0.98 12 16 2.1e-06 0.00018 22.4 0.5 1 23 646 668 646 668 0.96 13 16 2.6e-06 0.00022 22.1 1.2 1 23 674 696 674 696 0.98 14 16 3.9e-07 3.3e-05 24.7 0.9 3 23 704 724 702 724 0.96 15 16 2.6e-05 0.0022 18.9 0.2 1 23 730 752 730 752 0.99 16 16 0.053 4.5 8.5 0.7 1 23 757 780 757 780 0.97
Sequence Information
- Coding Sequence
- ATGGACCAGGTCCAATACGACTTTAATCGTATTTGTCGCACGTGCAAAACCGAGTCGACGGACATGAGATCGGTGTTTGATGGATGCGAAATGTTGCACGAATGTCCCCGTATTGACGAGATGCTAATGGCTTGTACATCCGTACAGGTCAAAGCCGAAGACGGATTGCCCAGTTTGATTTGCTCTACGTGCACCGACCACCTCAAAACTGCTTATGTTTTCAAACAACAATGCCAACAAACAGACGTCTGTCTCAGAGAGTACGCCAGGAATTTAAAAGTCGACGACATCAAAGAAGAGCTCCAGAATGCAGACGGGATGTTCACAGAGTCGTTGGAGGAAGTCCTCAGCCAGGACTCCCCCAAAGACACCCCCACCGCCTCCCAACGGTCCGACTTTATCGAGTTCATGGACAACAACCAGATGATCCTGACTTGTCGAGAGTGCGGCAAAGTCTTCACAACGTTGGAAGGCTTGCGCAGCCACAAACGCATCCACTTAGGTACGCTCTTCAAGTGCCGATACTGCGGCAAAGGCTACACCAGACAGACCCACGTCTATCGTCACGAACTCTCCCACGGGAAACACAAGCTCCACGTGTGCAGAATATGCAACAAGACCCTGACCAGAATGGAACACCTGAAGCGCCATCTGACCACGCACCTCAAAGAGAAACCGTTCTCTTGCAAGTCCTGCAACAGAGGCTTCAACAGATCGGATCATCTGGACGTCCACGCGGTCAGGTGCAAAGGGGAGAGGGTGCACATTTGCGACATCTGCAACAGAGGATTTTCGAGGGAGGATAGTCTGGAGGTGCACAAGAGACTGCACGAGAATCAAAAACCGGCGTTGCCTACTCTGGATAACATAGACAACATAGAGGAGCACTACTACGAAATCGACTACGACCCCAATCTGGACTATTCCGCGGGGTCCGACGTCGACGATTATCTGGAGCCGCACGTGGAAGTCACCGAGAACTTGGACGAGGATAAAATTAAAGAAGTTGCGGATTTCCAGAACGAGGACAGTTCGTCCAACAAGGCGACAGAGACTGAGGAACCGTTGGATATTAAGGACATGTTAGAATCTCAAGTAGAGCTCGAAATAAACGAACACGATATTAACATAGACGAAGACAAGAAGATAATCAGTAGAGTGGTACAGAATGACGAGTACAATCCCGAGCAAGACGAAGACGTCGCCATCGAGGCTGCAGACAACGACTCGGACAGCGCCCACTCGGAGTACCTCCCGACGAAAGCCAACCCGCCGAGGGGCAAGCGCAGTCGAGGGAGGCCGCGGAAGCACGGATCTAGTTACAAGGCCACCGGGAGGCCCCGGGGCCGCCCCCCTGGCGTCAAGAAGGAGCGCAGAGACCCCGTCGAGAAGGAGGAAGAAGGGGAGTTCGCGTGTCCGAGCTGCAGCGACGTCTTCACCAAGATGAGCCTGTTGGAGAAGCACACGAAGAGTCACGAAGGGGCGAAAGTGCACACCTGCAAAGTGTGCAGCAAGGAGTTTTCCAGATTCAACCACTTGAAGAGGCACATGACGTCGCATTCGGTCGTTCGACCGTTCTCGTGCGACGTCTGCGCGAAGAAGTTCTCGCGAAGAGATCACTTGCAGCAACACGTCAGGTTGCACGACAAGAAGCAGGAGTATCAGTGCGACATTTGTCTCAAGACGTTCAACAGGGCGGATCAGCTGGCGAAGCACAAGGTCTCCAAGCACAATGTGGGGGAGAAGGCGTTGGGCGAGAAAAAGTACGAGTGCCACGTCTGCCTGAAGACCTTCACGACCGAGAAATACCGAGACGTGCACGTCAAGGGCCACATGGGCGAGAAACGCTTCCAGTGCAAGACCTGCGACAAGTGTTTCCTGTCTAAGTCCCACCTGACCGAACACATGAAGTTCCACAACGAACATTCGAAGAAGTTCCTGTGTTCGGAGTGCGGCCAGAGATTCATCAGGAACGACTACTTGGTGATCCACATGAGGAGGCATCGCGGCGAGAAACCGTTCAAGTGTAAATACTGCGGCAAGGGATTCCCCCGTACCACCGATCTGACAGTGCACGAGCGCTACCATACCGGTGAGAAGACGCATCTGTGTACGATATGCGGCAGAGGTTTCGGAAGGGCGTACAATCTGACGGTGCATATGAGAACTCACACGGGGGAAAAACCGTACAGGTGTACGTATTGTGATGCTGCCTTCGCCCAAGGGAACGATCTGAAAGCGCATGTGCGGAGGCACACAGGGGAAAGGTTTCAGTGTGAGCTGTGCACTGAAAGCTTCCTCATGGGGTACCTTCTCACCCAACACAAGAGGACCGTTCACGGTCTGAACGTAGTCAGTAACATCAGGCGGCTCCAGCCCGTTAATAAGATTAAACAAGACTCGGACGATCCGCCTCCAATCACGATTCCATTGCCTAAACCCGTTGTACCTGATATCCTCCTAACCAACATACAAGCCCATCTAACAGCGCAAATTCAGCACCACCAGCTTGCAAGAGAATAA
- Protein Sequence
- MDQVQYDFNRICRTCKTESTDMRSVFDGCEMLHECPRIDEMLMACTSVQVKAEDGLPSLICSTCTDHLKTAYVFKQQCQQTDVCLREYARNLKVDDIKEELQNADGMFTESLEEVLSQDSPKDTPTASQRSDFIEFMDNNQMILTCRECGKVFTTLEGLRSHKRIHLGTLFKCRYCGKGYTRQTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPFSCKSCNRGFNRSDHLDVHAVRCKGERVHICDICNRGFSREDSLEVHKRLHENQKPALPTLDNIDNIEEHYYEIDYDPNLDYSAGSDVDDYLEPHVEVTENLDEDKIKEVADFQNEDSSSNKATETEEPLDIKDMLESQVELEINEHDINIDEDKKIISRVVQNDEYNPEQDEDVAIEAADNDSDSAHSEYLPTKANPPRGKRSRGRPRKHGSSYKATGRPRGRPPGVKKERRDPVEKEEEGEFACPSCSDVFTKMSLLEKHTKSHEGAKVHTCKVCSKEFSRFNHLKRHMTSHSVVRPFSCDVCAKKFSRRDHLQQHVRLHDKKQEYQCDICLKTFNRADQLAKHKVSKHNVGEKALGEKKYECHVCLKTFTTEKYRDVHVKGHMGEKRFQCKTCDKCFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVNKIKQDSDDPPPITIPLPKPVVPDILLTNIQAHLTAQIQHHQLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167788; iTF_00753179; iTF_00415301; iTF_01481088;
- 90% Identity
- -
- 80% Identity
- -