Gcor009131.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gnatocerus cornutus
Gene Symbol
-
Assembly
GCA_029298725.1
Location
CM055513.1:11101079-11105582[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.6e-06 0.00029 21.5 0.5 2 23 141 162 140 162 0.97
2 16 0.00026 0.02 15.6 4.1 1 23 167 189 167 189 0.97
3 16 0.00029 0.023 15.5 5.2 1 23 195 217 195 217 0.97
4 16 0.00024 0.019 15.8 0.6 1 20 223 242 223 244 0.94
5 16 1.9e-05 0.0015 19.2 0.7 1 23 251 273 251 273 0.96
6 16 0.00022 0.017 15.9 0.1 1 23 459 481 459 481 0.98
7 16 0.00012 0.0098 16.7 5.8 1 23 487 509 487 509 0.96
8 16 2.3e-07 1.8e-05 25.2 2.5 1 23 515 537 515 537 0.98
9 16 7e-05 0.0055 17.4 1.3 1 23 543 566 543 566 0.94
10 16 0.015 1.2 10.1 2.0 1 23 578 600 578 600 0.94
11 16 0.0003 0.024 15.4 8.1 1 23 606 628 606 628 0.98
12 16 1.8e-06 0.00014 22.4 0.5 1 23 635 657 635 657 0.96
13 16 2.3e-06 0.00019 22.1 1.2 1 23 663 685 663 685 0.98
14 16 3.5e-07 2.7e-05 24.7 0.9 3 23 693 713 691 713 0.96
15 16 8.1e-05 0.0064 17.2 0.2 1 23 719 741 719 741 0.99
16 16 0.047 3.7 8.5 0.7 1 23 746 769 746 769 0.97

Sequence Information

Coding Sequence
ATGGCCCAAGTCGAGTACGACTTAAATCGGGTTTGTCGGACGTGTAAAACCGAGTCGACACAGATGAGATCTGTATTTGAGGGCTACGAATTGTTGCACGAATGTCCCCGTATTGACGAGATGCTAATGGCTTGTACCTCCGTCCAGGTGAGAGTGGAAGACAGATTGCCCAAGTTAATTTGCGTCAGTTGCACGGAACAGCTCAAAGGTGCTTATATTTTCAAACAACAGTGTCAAGAAGTCGATGCCTCTCTCAGGGAATATGTCAAGAATTTTACGGAGGATATCAAAGTGGAGTTGCAAAATTCCGAAGGACTTACTGAAACCGATGTCCTTCCTCAAGAAGAATCGAAGCAATCAACCAATTCCCCCGAAAACTCGGACTTTATCGAGTTCATGGAGAACAACCAGATGATCCTAACTTGCCGCGAATGTGGAAAAGTCTTCACCACTCTCGAAGGCCTCCGCAGCCATAAACGTATACACTTAGGCACTCTCTTCAAATGTCGGTACTGTGGTAAAGGTTACACTCGTCAGACTCACGTTTACCGCCACGAATTGTCGCACGGAAAACACAAACTCCACGTTTGTAGAATATGTAACAAGACGCTTACACGAATGGAGCACTTAAAACGACATCTTACCACTCATTTGAAAGAGAAACCGTACTCTTGTAAGTCGTGTAATAGAGGGTTTAACCGATCTGATCACTTGGAAGTTCATGCTTTGAGGTGTAAGGGCGAAAGAGTCCATATTTGTGATATTTGCAATCGAGGATTCTCGCGAGAGGATAGTCTGGAGGTGCATAAGAGGCTGCATGAGAATCAGAAGCCGGCGCTACCTACTTTGGATAATATAGATAATATAGAAGAGCATTATTATGAGATTGATTTTGATCCCAATATGGAATACACGGCTTCTTCGGATGTGGATGACTACTTAGAACCTCATGTGGAAGTCACGGAAAATTTCGACGAGCAAAAAATGAAGGAAGTTGCGGATTTGCAGAATGACGACAGTTTACAGAGGAAAGAGGCTGAGCAGATGGACAtcaaacaaattttagattctcAGGTGGACATCGAAATCAGCGAGAGCGATATTATTATTGACGAAGATAAGAAAATCGTGAGTGGGAGTTTCCAGAGCGAAGATTATGGAAATGAGCAGGAAACGGAAATACAACATGATGCACCTGCGGACAACGACTCTGATAGTACCCACTCCGAGTACCTCCCCACGCGAATGGTGAAAAAGCGCGGTCGCGGCAGACCACGCAAAAATCCAGCAACTTCGTACAAAAGCGCCAATCGCACTAAAAATCGCTCCACTGCCCTGAAAAGAATCGATAATGAAGATGATGAAGAAGGAGAATACCCGTGTCCCATCTGTAGTGAAGttttcaacaaaattagtttattaGACAAACACGCGAAAGTCCACGACGGCGCGAAAGTGCACATTTGTAAAGTTTGTAATAAGGATTTCGTTCGATTCAATCATTTAAAAAGACATATGACGTCACATTCTTTCGTTCGACCATTTTCCTGCGACATCTGTCCGAAGAGGTTTTCCAGAAGAGACCATTTGCAGCAACATATCAAGTTGCATGATAAGAAACAAGACTTTCAGTGTCCGATTTGTTTGAAGATGTTCCACCGAGCCGACCAGTTGGCGAAGCACCGAGTTTCAAAACACACTGAGGGGGAGAAGCCTTTGGGGGAGAAGAAGTACGAGTGCCATGTCTGCTTGAAAACCTTCACAACGGAGAAATACCGCGATGTGCACGTCAAAGGTCACATGGGTGAAAAACGATTTCAATGCAAAACCTGCGATAAATGTTTCCTATCAAAGTCGCACCTCACTGAGCACATGAAGTTCCACAACGAGCATTCAAAGAAGTTTCTCTGTTCGGAATGTGGCCAAAGGTTCATCCGTAACGATTATCTGGTCATTCATATGAGGAGGCATCGAGGCGAGAAACCCTTCAAATGCAAATACTGTGGCAAAGGTTTTCCAAGGACCACGGATCTAACTGTCCACGAACGTTACCACACCGGAGAAAAAACTCATTTGTGTACAATTTGCGGACGAGGCTTTGGAAGGGCGTATAATTTGACGGTTCACATGCGGACACACACCGGGGAAAAACCGTACAGATGTACATACTGTGAGGCTGCGTTTGCTCAAGGCAATGATCTCAAAGCGCACGTGCGGAGGCACACAGGCGAGCGGTTCCAGTGCGAGTTGTGCACGGAAAGTTTTCTCATGGGGTACCTTCTAACGCAACATAAAAGAACAGTTCATGGCTTGAATGTCGTCAGCAATATCCGCCGCCTCCAGCCTGTGAGTAAAATCAAACAAGACACGGACGAGCCGCCTCCGATTACAATTCCGTTGCCTAAGCCGGTGGTACCTGATATTCTTTTGACCAACATTCAAGCGCATTTGACGGCACAAATTCAACACCATCAGCATCCGTTAGCCAGAGAATAA
Protein Sequence
MAQVEYDLNRVCRTCKTESTQMRSVFEGYELLHECPRIDEMLMACTSVQVRVEDRLPKLICVSCTEQLKGAYIFKQQCQEVDASLREYVKNFTEDIKVELQNSEGLTETDVLPQEESKQSTNSPENSDFIEFMENNQMILTCRECGKVFTTLEGLRSHKRIHLGTLFKCRYCGKGYTRQTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPYSCKSCNRGFNRSDHLEVHALRCKGERVHICDICNRGFSREDSLEVHKRLHENQKPALPTLDNIDNIEEHYYEIDFDPNMEYTASSDVDDYLEPHVEVTENFDEQKMKEVADLQNDDSLQRKEAEQMDIKQILDSQVDIEISESDIIIDEDKKIVSGSFQSEDYGNEQETEIQHDAPADNDSDSTHSEYLPTRMVKKRGRGRPRKNPATSYKSANRTKNRSTALKRIDNEDDEEGEYPCPICSEVFNKISLLDKHAKVHDGAKVHICKVCNKDFVRFNHLKRHMTSHSFVRPFSCDICPKRFSRRDHLQQHIKLHDKKQDFQCPICLKMFHRADQLAKHRVSKHTEGEKPLGEKKYECHVCLKTFTTEKYRDVHVKGHMGEKRFQCKTCDKCFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCEAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVSKIKQDTDEPPPITIPLPKPVVPDILLTNIQAHLTAQIQHHQHPLARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01410167;
90% Identity
iTF_00415301;
80% Identity
-