Trug000068.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax rugatulus
Gene Symbol
Trl
Assembly
GCA_035220575.1
Location
JASTWL010000001.1:787974-792693[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.3e-12 1.3e-07 33.0 0.4 11 44 291 324 285 327 0.93
2 2 4.1e-18 6.5e-14 53.2 0.1 16 49 411 444 403 448 0.92

Sequence Information

Coding Sequence
ATGGGTAGCAGCGGCCAGCTCTACAGTCTGTCCTGGGGAGAGTTCAGTTCCTCTCTGGCCTCCGCGGTGCAGGTGTTGAGGGGAGACGGCGATCTGGTGGACGTTACCTTGGCCGCCGGCGGACGCAGCTTTCGCGCGCACAAGATTGTTCTCTGCGCGGCCAGTCCGTTCCTGTTGGACCTGCTAAAGAGTACGCCATGCCAGCATCCGGTGGTTATGCTAGCGGGAATCGGAGCGGATGATTTGGAGTCTTTGCTGGAATTTGTATACCGAGGAGAAGTGAGCGTCGAGCCGGCGCAGTTGCCTTCCTTGCTCCAGGCTGCCCATTGTCTGTGCATTCACGGATTAACAAAGCCAACTGTACTGACGGAGAGTGGAGAAGAAGTTCCTGCGTCTGCGATACCAACGGCGACGAACGATGGAGTGTCGAGAGCGACGGGCAACTCGTATTATCCATTGAAACGCAGGAAAAAGAGGAGGAAGTCGTCGACGTCCTCTGCAAAGTGGCAATGCACTAGTAATACTACCGACAGCGAAAGCAGGCCTTTGGACGACAACAACAGAACAATGCCTTACGAAAATAAGGACGACGACACCATGGAAACCGATGACGCAGCGGGCAACTGCCTGGTCGGAAACAACGCGAACAACCATCAGGGCGGCAGTCATTCACCGCTTCAAGACTCGTCCGTCGCGGACAATCATCAGGCGGCGCATCAGGAACAGGTTTCGGACGGCGAATCGCATCTGCATACGCTAATGCCGATGCAGTTGCAAATACCGCAGTTCCACAGCTCCCTCAACATGGGCTTTCCGTCCGGTCTGGCGTCGTTATCCGGCTTAGCGAGCACCCAGACGGCGTCGAGCGGTGGCGCGAATCAGTCGAAGGCGCGCGGCGCCTCCGACTGCCCGGGCGTTTGCCCGCTTTGTGGCGCGACCCTGCGCCAGGCGAGAAATCTGCGCAGGCATCTGTTATCCTCGTGCAAGTACCGGTTCAACAACTCGGCGGCGACTACGATGGCGATGGCGGCAGCGCAGAATTCCGACTCGACGGAGATCAAGACCGAGATCAAGACCGAGATTGAAGCGCCGGGCTACGATCAGTCATCAATGACGTATGGGACCGACAGCGGCAGTAACGACTGCGAACAGATAGTCTGCAATCCTATCCTACCCTCACCGACGTCGCACGAGAGCGTGGTATCGTCGCCGAACAGGGACGGATCGTCGAAGGCACGCAGTCTGTCCGATCAGCCGGTGTCGTGTCCGCTGTGCGGCGCGATTCTGCGTCAATCGAGAAATCTCAGAAGGCACTTGGAGCTTCTGCACTTCGGTCTGGGCAACAGCGGCAAGTCCGGCATACAGGCGAGGCATCGGCGtgtggcagcggcggcggcggcggtggcggcggcggacAGGGCCAACGACTTCGGCCTGTCGTCTCTGGCGTGCGTTCGTCCCACCGTCAGGCTGGACTCGCACCTCGCCGCGAGGTCCTCCGAAGCCTCGGACTTTTCCATGATGACACCCTTGTCGATCGCCTCGTCCGTCAGTTCCGCTTCGAGCGTCAGTCTTCCAGGGAATCTGATGGGTACGAGCTCAAGTCTATTGGGTTCCGGCGATCAAAACGGACATCCGCTGTCAGGATCCACTCCAGCCACGTGCAGCACCGCATCTATGGTACCTCCGACCAACGGGATCTACTCCTCGGACGGCGGTCCCAGTATGCTGAGCTGCCTGCTACCGTCGTTGCCCACTTTACCGTCCTTTTCCACGTCTCATGATGTGTTCCGACACGGCGAGATGTTGCGCGCGGGGATCGCCTACCACGATTCCTCCCGACAGCACGTCAGACACATGCAGCGCACGGACGTCACCTAA
Protein Sequence
MGSSGQLYSLSWGEFSSSLASAVQVLRGDGDLVDVTLAAGGRSFRAHKIVLCAASPFLLDLLKSTPCQHPVVMLAGIGADDLESLLEFVYRGEVSVEPAQLPSLLQAAHCLCIHGLTKPTVLTESGEEVPASAIPTATNDGVSRATGNSYYPLKRRKKRRKSSTSSAKWQCTSNTTDSESRPLDDNNRTMPYENKDDDTMETDDAAGNCLVGNNANNHQGGSHSPLQDSSVADNHQAAHQEQVSDGESHLHTLMPMQLQIPQFHSSLNMGFPSGLASLSGLASTQTASSGGANQSKARGASDCPGVCPLCGATLRQARNLRRHLLSSCKYRFNNSAATTMAMAAAQNSDSTEIKTEIKTEIEAPGYDQSSMTYGTDSGSNDCEQIVCNPILPSPTSHESVVSSPNRDGSSKARSLSDQPVSCPLCGAILRQSRNLRRHLELLHFGLGNSGKSGIQARHRRVAAAAAAVAAADRANDFGLSSLACVRPTVRLDSHLAARSSEASDFSMMTPLSIASSVSSASSVSLPGNLMGTSSSLLGSGDQNGHPLSGSTPATCSTASMVPPTNGIYSSDGGPSMLSCLLPSLPTLPSFSTSHDVFRHGEMLRAGIAYHDSSRQHVRHMQRTDVT