Tsep001968.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- Trl
- Assembly
- GCA_001594115.1
- Location
- NW:3068082-3076983[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-12 5.7e-08 32.0 0.4 11 44 288 321 283 325 0.92 2 2 1.7e-18 1.8e-14 52.9 0.0 16 49 415 448 410 451 0.93
Sequence Information
- Coding Sequence
- ATGGGTAGCAGTGGCCAACTCTACAGTCTGTCCTGGGGAGAGTTCAGTTCTTCTCTGGCCTCTGCAGTGCAGCTGTTGAGGGGAGATGGCGATTTGGTGGATGTTACTTTAGCTGCCGGCGGACGCAGCTTTCCTGCACACAAAATTGTTCTCTGTGCAGCCAGTCCGTTCCTGTTGGATTTGTTAAAGAGCACGCCATGCCAGCATCCAGTGGTTATGCTAGCAGGAATCGGAGCAGATGACTTGGAGTCTCTGCTGGAATTCGTATACCGAGGAGAAGTGAGCGTCGAGCCGGCACAGTTGCCTTCCTTGCTTCAGGCTGCCCATTGTCTGAGCATTCAGGGATTGACGTCGTCAACTAATATACTAACGGAGAGTGGAGAAAAAGTTCCTGAGTCTGCGATACCAACAGTGACGAACGATGGAGTGTCGAGGACAACAGTCAACTCGCATCCATTGAAACGAAGAAAAAAGAGGAGGAAGTCATCGTCATCCTCTGGAAAGTGGCAGTGTAGAAATACCGCTGACAGCGAAAGCAGGCCTTTGGACGACAACAACAGAACAATGCCTTACGAAAACAAGGATGACGCCATAGATCAAACCGATGATGCAGCGAGTAACTGCCTAGTCGGAAACTACGCGAACAACCATCAGGGTGGCAGTCATTCACCACGACTTCAAGAATCGTCCGTCGCGGACAATCATCAGGCGGCGCATCAGGATCAGGTTGCGAACGAAGAGTCGCACTTGCATACGATGATGCCATTGCAATTGCACATACCGCAGTTCCACAGCTCCCTCAACATGGGTTTTTCATCTGGTATGGCGTTATCAGGCTTGGCGGCTACTCAGGCAGCATTGGGTATGAATCAGTCGAAGACACGTGGCGCCTCCGACTGCCCGGGCGTTTGTCCACTTTGCGGCGCGACCTTACGTCAAGCGAGGAATCTCCGTAGGCATCTATTGTCTTCGTGTAAATTTCGGTTTAACAACTCGGCGCCGAATGCGATAACGACGCAGAATTCCGATGAGACGACAGTGGAGATTAAGCGTgagataattgataattacaaCGATCAATCGTCGATGACGTATGGGACCGACGGCAGTAATGACTGCGAACAGATAGTCTGCAATCCCACCTTACCCTCACCAACGTCGCACGATCCTGAAAGCGCAATATCATCACCAAGGAGCATCCCTCTGTCTAGTTTCGAATTCGTTCTAGGGGATGGATTGTCGAAAGCACGTAGTCTGTCCGATCAACCAGTGTCGTGTCCGCTGTGCGGCGCGATTCTGCGTCAATCAAGAAATCTCAGAAGACACTTGGAGCTTCTGCATTTCGGTTTGGGCAACAGTAACAAGTCTGGGATACACGCGAGGCATCGACGTGCGGCAGCGGCAGCAGTGGTCGCGGCGGCAGACAGGGCCAGCGATTTCGGCCTGTCATCCTTGGCGTGCGTTCGTCCCACTGCCAGGCTGGACTCGCACCTCGCCACGAGATCCTCCGAGGTCTCGGATTTTTCCATGGTGACACCCCTGTCGATTGCCTCGTCCGTCAGTTCCGCCTCGAGCGTCAGTCTTCCAGGGAACCTGATAAGTACAAGTTCGAGCCTATTGGGTTCCGGTGATCAAAATGGACATACATTGCCGGGAGCCACCCCAGCTACGTGCAGCACGTCAATGGTGCCTCCGACTAACGGGATCTACTCCTCGGATGGCGGTCCCAGTATGCTGAGCTGCCTGTTGCCGTCGTTGCCAACTTTGCCGTCCTTCTCTACGTCCCACGATGTGTTCCGACACGGGGAAATGTTGCGCGCGGGGATCGCCTACCACGATTCCTCTCGACAGCACGTCAGGCACATGCAGCGCACGGACGTCACCTAA
- Protein Sequence
- MGSSGQLYSLSWGEFSSSLASAVQLLRGDGDLVDVTLAAGGRSFPAHKIVLCAASPFLLDLLKSTPCQHPVVMLAGIGADDLESLLEFVYRGEVSVEPAQLPSLLQAAHCLSIQGLTSSTNILTESGEKVPESAIPTVTNDGVSRTTVNSHPLKRRKKRRKSSSSSGKWQCRNTADSESRPLDDNNRTMPYENKDDAIDQTDDAASNCLVGNYANNHQGGSHSPRLQESSVADNHQAAHQDQVANEESHLHTMMPLQLHIPQFHSSLNMGFSSGMALSGLAATQAALGMNQSKTRGASDCPGVCPLCGATLRQARNLRRHLLSSCKFRFNNSAPNAITTQNSDETTVEIKREIIDNYNDQSSMTYGTDGSNDCEQIVCNPTLPSPTSHDPESAISSPRSIPLSSFEFVLGDGLSKARSLSDQPVSCPLCGAILRQSRNLRRHLELLHFGLGNSNKSGIHARHRRAAAAAVVAAADRASDFGLSSLACVRPTARLDSHLATRSSEVSDFSMVTPLSIASSVSSASSVSLPGNLISTSSSLLGSGDQNGHTLPGATPATCSTSMVPPTNGIYSSDGGPSMLSCLLPSLPTLPSFSTSHDVFRHGEMLRAGIAYHDSSRQHVRHMQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408717;
- 90% Identity
- iTF_01477732;
- 80% Identity
- iTF_01477028;