Pcal022655.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- Trl_3
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010000135.1:373223-377807[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-12 9.8e-08 32.9 0.2 12 44 299 331 294 334 0.94 2 2 2.7e-18 4.6e-14 53.2 0.0 16 49 385 418 378 422 0.93
Sequence Information
- Coding Sequence
- ATGGGTAGTAGCAGCCAACTGTATAGTCTGTCCTGGGGAGAATTCAGTTCCTCTCTGGCCTCTGCAGTACAACTGCTAAGAGGACACGGTGAATTGGTGGATGTTACCTTGGCTGCTGGTGGACGGAGTTTTCCTGCACATAAGATAGTTCTTTGTGCAGCAAGTCCATTTTTACTGGACTTGTTAAAGAGTACACCATGCCAACATCCAGTGGTCATGCTAGCAGGAATTGGAGCAGATGATTTGGAATCTCTATTGGAATTTGTATACCGAGGAGAAGTGAGTGTCGAACCGGCACAATTGCCTTCTTTGCTCCAAGCTGCTCATTGCTTAAGCATCCATGGGTTAACACCACCAACTATAGTAACAGAGAGTGGCGAAGAAGTTCCTGCGTCTGCGATACCTACGGCGACGAATGATGGATTACCAAGGGCGACGCTCAATTCATATTATCCATTAAAACGAAGAAAAAAGAGGAGGAAGTCGTCGACATCCTCTGGAAAATGGCAATGCACCAGTAATACTACTGATAGCGAAAGCAGGCCTTTGGATGACAACAGAACAATGCCTTATGAAAATAAAGATGACGATGCTACAGATCAAACCGATGATGCAGCGGGCAACTGCTTGGTCGGAAACTATGCGAACAACCATCAGGGCGGCAGTCATTCACCGCGACTTCAAGACCCATTATCCGTCGCGGACAGTCAGGCGGCACAACAGGATCACGTCTCGGATGGCGAGTCGCATCTGCATACGCTAATGCCGATGCAGTTCTCGCCGTTGCAGATACCGCAGTTCCACAGCACCCTCAACATGGGCTTCCCGTCTGGTCTTGCGTTGTCCGGCTTGGCGGCCAGTCAGACCGCGTCGTCTGGCACATTAACTGGAAGCACGAATCAATCAAAAGCTCGCGGCGCTTCCGACTGTCCAGGTGTTTGTCCGCTTTGTGGCGCGACTTTACGCCAGGCAAGGAATTTACGTAGGCATTTATTGTCTTCGTGCAAATATCGATTCAGCAACAATTCGACGACGACCACGACAACGCAGAATTCCGACACGACGATAATGGAGATTAAACCCGAGGTTGAGTTATCGACTTACAACGAGTCATCGGTGACTTATGGAACCGACAGCGGGGACGGATTGTCGAAGGCGCGCAGTTTGTCCGATCAGCCAGTCTCGTGTCCACTGTGCGGCGCGATTCTGCGCCAATCGAGAAATCTCAGAAGACACTTGGAGCTTCTGCACTTCGGTCTGGGCAATAGTAGCAAATCTGGCATACACGTGAGGCATCGGCGCGTGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCGGATAGAGCCAACGATTTCGGCCTGTCGTCTTTAGCCTGCGTTCGTCCCACCGCTAGGCTGGACTCACACCTCGCCACGAGATCTTCTGAAGCATCGGACTTTCCCATGATGACACCCTTGTCGATCACTTCGTCCGTCAGTTCCGCTTCGAGCGTCAGCCTTCCAGGGAACTTGATGGCTCCGAGTTCGGGTCTGTTGAGTTCCAGCGATCAAAATGGACATCCGCTGCCGGGAGCCACCCCGGCCACGTGCAGTACATCTATGGTGCCTCCAACCAATGGGATCTATTCCTCGGACAGCGGTGCTAGTATGCTAAGCTGTCTACTGCCATCCTTGCCCACCTTGCCGTCCTTCTCTACGTCTCACGATGTGTTCCGACACGGCGAGATGTTGCGCGCGGGAATTGCTTACCACGATTCTTCCCGACAGCATGCCAGGCATATGCAGCGCACGGACGTCACGTAA
- Protein Sequence
- MGSSSQLYSLSWGEFSSSLASAVQLLRGHGELVDVTLAAGGRSFPAHKIVLCAASPFLLDLLKSTPCQHPVVMLAGIGADDLESLLEFVYRGEVSVEPAQLPSLLQAAHCLSIHGLTPPTIVTESGEEVPASAIPTATNDGLPRATLNSYYPLKRRKKRRKSSTSSGKWQCTSNTTDSESRPLDDNRTMPYENKDDDATDQTDDAAGNCLVGNYANNHQGGSHSPRLQDPLSVADSQAAQQDHVSDGESHLHTLMPMQFSPLQIPQFHSTLNMGFPSGLALSGLAASQTASSGTLTGSTNQSKARGASDCPGVCPLCGATLRQARNLRRHLLSSCKYRFSNNSTTTTTTQNSDTTIMEIKPEVELSTYNESSVTYGTDSGDGLSKARSLSDQPVSCPLCGAILRQSRNLRRHLELLHFGLGNSSKSGIHVRHRRVAAAAAAAAAADRANDFGLSSLACVRPTARLDSHLATRSSEASDFPMMTPLSITSSVSSASSVSLPGNLMAPSSGLLSSSDQNGHPLPGATPATCSTSMVPPTNGIYSSDSGASMLSCLLPSLPTLPSFSTSHDVFRHGEMLRAGIAYHDSSRQHARHMQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408717;
- 90% Identity
- iTF_01229136; iTF_01229394;
- 80% Identity
- iTF_01229136; iTF_01229394;