Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: -
Assembly: GCA_035220575.1
Location: JASTWL010000016.1:1342855-1347905[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.1e-12 2.2e-09 38.2 0.0 1 39 297 336 297 340 0.90

2 4 1.3e-12 1.4e-09 38.9 0.1 2 39 352 389 351 392 0.94

3 4 1.9e-18 2e-15 57.6 0.0 1 45 406 451 406 451 0.97

4 4 3.4e-18 3.6e-15 56.7 0.1 1 42 458 500 458 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.1e-12	2.2e-09	38.2	0.0	1	39	297	336	297	340	0.90
2	4	1.3e-12	1.4e-09	38.9	0.1	2	39	352	389	351	392	0.94
3	4	1.9e-18	2e-15	57.6	0.0	1	45	406	451	406	451	0.97
4	4	3.4e-18	3.6e-15	56.7	0.1	1	42	458	500	458	501	0.97

Sequence Information

Coding Sequence: ATGCCGGGACGACCGGCTCTCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCGCGCCGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCTTGAGCTCGCCTCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAGCGGCCCGCGTTCGAGCCGCGCGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCCagcgtaataataataacaataacaacaacaacGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTACGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACCACCATCACTCACCTGAGGGACCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTGCACACGATGGACTCCTCCGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGTTGCTGGGGCTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGGCACAGCGGACAGTCGAGCTCGCATCATCACGGTTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCGCTGAGAAATCACAACATGAGCCTGACGAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTGTGGCAACGGGCACATCGATTGGGCATCGACACGCCGAAGAAAGATGGCCCCACGAAATCCTGGAGTGACGAGAGCTTGAACAATGCTTTAGAGGCGTTGCGCACCGGCTCCATTTCGGCTAACAAGGCGTCTAAGGCGTACGGCATACCTTCCAGTACGTTGTACAAGATTGCCAGGAGAGAAGGCATCAGACTGGCCGCGCCGTTCAACGCGAGTCCCACTACGTGGACGCCGGCCGATCTGGACCGCGCCCTAGAAGCAATAAGATCCGGTCAGACCTCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTATACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGGTTAGGGCACATGAGCATAAATCAAGCGGCGATTCACTACAATCTGCCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAGCCCGTCGTCGGCGACCTCTCGCAGGATGGCACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MPGRPALAREICKSNRTGPAPSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPAFEPRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_01405603; iTF_01408981;