Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000135.1:393769-401405[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 8.7e-13 2e-09 38.2 0.0 1 39 310 349 310 353 0.90

2 4 5.3e-13 1.2e-09 38.8 0.1 2 39 365 402 364 405 0.94

3 4 7.7e-19 1.7e-15 57.5 0.0 1 45 419 464 419 464 0.97

4 4 1.4e-18 3.2e-15 56.7 0.1 1 42 471 513 471 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	8.7e-13	2e-09	38.2	0.0	1	39	310	349	310	353	0.90
2	4	5.3e-13	1.2e-09	38.8	0.1	2	39	365	402	364	405	0.94
3	4	7.7e-19	1.7e-15	57.5	0.0	1	45	419	464	419	464	0.97
4	4	1.4e-18	3.2e-15	56.7	0.1	1	42	471	513	471	514	0.97

Sequence Information

Coding Sequence: ATGCATTTGTTATCGAGTGTCCTTCAATTACACGGCGAAAGCGGTTGTAGCATTGGAAGAATAGTGACGGAGACCTTTTCTACAACCGACTTTGTCCAACAGTCGCTCCTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTGAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAGCGGCCCGCGTTCGAGCCGCGCGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCagcgtaataataataacaataacaacaacaacGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTACGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACCACCATCACTCACCTGAGGGACCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTGCACACGATGGACTCCTCCGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGTTGCTGGGACTGATGCCGTCCGGAAGCTCCGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGGCACAGCGGACAGTCGAGCTCGCATCATCACGGTTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCGCTGAGAAATCACAACATGAGCCTGACGAAAGCTTCAGCAACATTCGGTATTCCCTCGACGACTCTGTGGCAACGGGCACATCGATTGGGCATCGACACGCCGAAGAAAGATGGCCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAACGCTTTAGAGGCGTTACGCACCGGCTCCATTTCGGCTAACAAGGCGTCCAAGGCGTACGGCATACCTTCCAGTACGTTGTACAAGATCGCCAGGAGAGAAGGCATCAGGCTGGCCGCGCCGTTCAACGCGAGTCCCACTACGTGGACGCCGGCCGATCTGGACCGCGCCCTAGAAGCAATAAGATCTGGTCAGACCTCCGTGCAGAGAGCGTCGACAGAATTCGGTATACCTACGGGGACTCTATACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGAAGCAATCCTACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTACCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACCTCTCGCAGGATGGCACCAGTCCGCATTTCCATCAAAGCCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MHLLSSVLQLHGESGCSIGRIVTETFSTTDFVQQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPAFEPRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_01408080;