Basic Information

Insect: Temnothorax americanus
Gene Symbol: KRBA2
Assembly: GCA_030770215.1
Location: JASTWO010000099.1:509580-512501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00017 0.026 16.1 4.5 2 23 377 398 376 398 0.97

2 15 0.00028 0.043 15.4 2.6 2 23 405 427 404 427 0.95

3 15 4.2e-06 0.00064 21.2 1.5 2 23 515 536 514 536 0.97

4 15 1.8e-05 0.0028 19.1 3.6 1 23 542 564 542 565 0.96

5 15 5.7e-05 0.0088 17.6 0.5 1 23 570 592 570 592 0.98

6 15 0.00029 0.045 15.4 3.4 1 23 610 632 610 632 0.97

7 15 1.4e-06 0.00021 22.6 1.2 1 23 638 660 638 660 0.97

8 15 1.1e-05 0.0017 19.8 2.4 1 23 666 688 666 688 0.98

9 15 0.0016 0.24 13.1 0.2 1 23 694 716 694 716 0.99

10 15 4.8e-05 0.0075 17.8 1.1 1 23 722 745 722 745 0.92

11 15 2.2e-05 0.0034 18.9 1.3 1 23 751 773 751 773 0.98

12 15 0.00048 0.074 14.7 4.7 1 23 779 801 779 801 0.98

13 15 6.2e-06 0.00095 20.6 0.4 1 23 807 830 807 830 0.97

14 15 6.7e-06 0.001 20.5 0.8 1 23 836 858 836 858 0.96

15 15 1.1e-06 0.00016 23.0 4.8 1 23 864 886 864 886 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00017	0.026	16.1	4.5	2	23	377	398	376	398	0.97
2	15	0.00028	0.043	15.4	2.6	2	23	405	427	404	427	0.95
3	15	4.2e-06	0.00064	21.2	1.5	2	23	515	536	514	536	0.97
4	15	1.8e-05	0.0028	19.1	3.6	1	23	542	564	542	565	0.96
5	15	5.7e-05	0.0088	17.6	0.5	1	23	570	592	570	592	0.98
6	15	0.00029	0.045	15.4	3.4	1	23	610	632	610	632	0.97
7	15	1.4e-06	0.00021	22.6	1.2	1	23	638	660	638	660	0.97
8	15	1.1e-05	0.0017	19.8	2.4	1	23	666	688	666	688	0.98
9	15	0.0016	0.24	13.1	0.2	1	23	694	716	694	716	0.99
10	15	4.8e-05	0.0075	17.8	1.1	1	23	722	745	722	745	0.92
11	15	2.2e-05	0.0034	18.9	1.3	1	23	751	773	751	773	0.98
12	15	0.00048	0.074	14.7	4.7	1	23	779	801	779	801	0.98
13	15	6.2e-06	0.00095	20.6	0.4	1	23	807	830	807	830	0.97
14	15	6.7e-06	0.001	20.5	0.8	1	23	836	858	836	858	0.96
15	15	1.1e-06	0.00016	23.0	4.8	1	23	864	886	864	886	0.99

Sequence Information

Coding Sequence: atgacaaaaataataatgaataaagaaATGCCGTTGAGCGTGGAATGGATGCCACAAAACGCGTACACGCACAATTCTTTGGATCACTTGCTGCCGGGAGACAGAAATCAGGACTTCTTGATCATAAAGCAGGAAGCggatttttttcaaagtacCCTGAGCTCGCAATCTGCGCAAAACAAAGCGCATCTGCAAGTCTTATCTAAAGAGAAGGACAAGGAGATCAAGCAAGAGAACAGCTATTCAGATGTATTGGCGACAGCCTGTCAAACGGACTCTTTAAATCGGTCGCCCAAAAGATTGACCGACGTTtcagagaaattatataataaaggtCGCATTGACGTAATAGAGATGACAATAGACCcgacatttaattataaatattttttcgtttatGAAGATCATTCGTCCAAGTTTGTCGTACTAAAGGCTCTCCGTAGCGATACAGCCAAAGAGGTCGCGGCGAATCTGTTAGACGTATTGGGGATCATAGGGGCACCACGAGTGCTGCAGAGCGGCAATGGGCGTAAGTTTGCTGAACAAGTTGTACGTGAACTACGTTCGCTGTGGAATGATTTGTTCATATTGCACGGGGACGCATCTAAGGGTGAAGTTAGCTACAGGGATTTTAAGACCTCGCTCGAATCCTGGATGAGAAAAAATCCAACTAGGACCTGGTGCGAAGGGCTGAACTTCATACAGATCGTTCATAACTCGACGTATCGCTGTCCTCAGAACGGCAAGGTCCCATACGACGTATTGTTCAGGCAAAACGTACGCGAGAATTTTCAAGGTATGGAAAAAGATGTGGAGGGTCTGAGGACGGAAGAAGAATGGCTCAAACATTTGTCGAATAAGAAGGACGGAGATGGGGCTGCAATGACGGGAGACACGCATCGGAATACATCAAACagtattaatCGGTACGAAGAAAACGAAAATGTACGAGATACACAGAATCAAAACCCACTTTCGAAAGCCGACGATGTAAATATGTTCAGTTACGTGAACGTGAAGAACGAATCTCTGGGgaataacgcgcgcgcgatggaTTCGCTGTCTACGGATGAAACGGAAAACAAAGCGAAAAATGAATTGAAGGTCAACGAAGATACTCAATCTCTCAAATGCAAGTACTGTCAAAAGCAGTACATGAAGATAGGGCATTTGAAGAACCACATGAGAACTCACAAAGCGAAACAAGTTCTCCATTGTAAGCTGTGCAATAAAACATTTAGCGTTCCGAGATTGTACGCGAAGCATATGAAGCAATCACACGGACAGGATAAATTAGCTGATGAGGAAAGAGAGATACCGGTTAGTAGAAATACGAGAAACAAGGCCAATGCATTAACGGCTACGCCTAACAAGGAAAGATCTGTGATTCAAACAACACACCAGACATCCGATCCCGGGAACAAAGATTGTGATTCGTCACCGGACACAAAAGAGTTTTCTGGCAAGGTCAGTAAGAACTCAAACCAAACCGGCAGACGGAAGCTGCCTGCGGAGAGTCGCGTGTCGAAGGTACAATCTTTACAATGTACGTATTGCAAACAAAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGATCGCACACGAACGAACGGCCGTACGTGTGCGAGGTGTGTAACAAGAGCTTCAAACAATTAGGCCATCTTAGTCAGCACTCGCTGACCCATCACAACTACCGTTCGTTCCAGTGCACGGTGTGCGACGTAAAATTCGACTCGTTGGATTCGCTGAAGCAACACGCGTCCACGCACAAAGGCTGGACAACGACGACGTCGTCCAAGATACGCGACGTCTATCGCCTGTTCGAGTGCGACTGCTGCAAAAAAGTGTTCACGACGAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTATGCGGCAAGCGGTTCAAACAGGCCGGTCACGTCAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACAGTCTGCTCGAAACGCTTCAGCTTGTCGAACTCGCTGAAGAAACACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGTTTCCTCGAGAAGCGCAACCTCAACGGCCACTTGTTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAACGTTACACCTTGGCGGACACTCTGCGCCGTCACGTTAGCGCCGCGCACGAGGACGGTCGTACGTATCAGTGCGAGATCTGTGCCAAAATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAGAAGGTGCACAACGACGAACGACCGTTCCAGTGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCAACGTTCGTCAGGAAGACGAATCTGCAGACGCATATTTCGTCCGCGCACATGAACGAGCGTCCGTATTCCTGCACCATCTGCGGCAAGCGCTTCAAGCAGATCAGTCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTTGACAATCTGAAGAAGCATATGCGCCTCCATATGAAGAACAAGGagtga
Protein Sequence: MTKIIMNKEMPLSVEWMPQNAYTHNSLDHLLPGDRNQDFLIIKQEADFFQSTLSSQSAQNKAHLQVLSKEKDKEIKQENSYSDVLATACQTDSLNRSPKRLTDVSEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDHSSKFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQVVRELRSLWNDLFILHGDASKGEVSYRDFKTSLESWMRKNPTRTWCEGLNFIQIVHNSTYRCPQNGKVPYDVLFRQNVRENFQGMEKDVEGLRTEEEWLKHLSNKKDGDGAAMTGDTHRNTSNSINRYEENENVRDTQNQNPLSKADDVNMFSYVNVKNESLGNNARAMDSLSTDETENKAKNELKVNEDTQSLKCKYCQKQYMKIGHLKNHMRTHKAKQVLHCKLCNKTFSVPRLYAKHMKQSHGQDKLADEEREIPVSRNTRNKANALTATPNKERSVIQTTHQTSDPGNKDCDSSPDTKEFSGKVSKNSNQTGRRKLPAESRVSKVQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHNYRSFQCTVCDVKFDSLDSLKQHASTHKGWTTTTSSKIRDVYRLFECDCCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYSCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406725;
90% Identity: iTF_01408463; iTF_01409380; iTF_01406725; iTF_01407569;
80% Identity: -