Tuni006000.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax unifasciatus
Gene Symbol
KRBA2
Assembly
GCA_030770225.1
Location
JASTWK010000079.1:306466-309524[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00016 0.025 16.2 4.5 2 23 375 396 374 396 0.97
2 15 0.00075 0.12 14.1 2.5 2 23 403 425 402 425 0.95
3 15 4.3e-06 0.00069 21.2 1.5 2 23 513 534 512 534 0.97
4 15 1.9e-05 0.003 19.1 3.6 1 23 540 562 540 563 0.96
5 15 0.00021 0.034 15.8 0.3 1 23 568 590 568 590 0.97
6 15 0.0003 0.048 15.4 3.4 1 23 613 635 613 635 0.97
7 15 1.5e-06 0.00023 22.6 1.2 1 23 641 663 641 663 0.97
8 15 1.2e-05 0.0018 19.8 2.4 1 23 669 691 669 691 0.98
9 15 0.0016 0.26 13.0 0.2 1 23 697 719 697 719 0.99
10 15 5.1e-05 0.008 17.8 1.1 1 23 725 748 725 748 0.92
11 15 2.3e-05 0.0036 18.9 1.3 1 23 754 776 754 776 0.98
12 15 0.0005 0.08 14.7 4.7 1 23 782 804 782 804 0.98
13 15 6.4e-06 0.001 20.6 0.4 1 23 810 833 810 833 0.97
14 15 7e-06 0.0011 20.5 0.8 1 23 839 861 839 861 0.96
15 15 1.1e-06 0.00017 23.0 4.8 1 23 867 889 867 889 0.99

Sequence Information

Coding Sequence
atgacaaaaataataatgaataaagaaaTGCCGTTGAGCGTGGGATGGATGCCACAAAACGCGTACATGCACAATTCTTTGGATCACTTGCTGCCGGGAGACAGAAATCAGGACTTCTTGATCATAAAGCAGGAAGCggaattttttcaaagtacCCTGAGCTCGCAATCTGCGCAAAACAAAGCGCATCTGCAAGTCTTGTGTAAAGAGGAGGACAAGGAGATCAAGCAACAGAACAGCTATTCGGATGTATTAGCGACACCCTGTCAAACGAACTCTTTAAATCGGTCGCCCAAAAGATTGACCGACGTTTcagagaaattatataataaaggtCGCATTGACGTAATAGAGATGACAATAGACCcgacatttaattataaatattttttcgtttatGAAGATCATTCGTCCAAGTTCGTCGTACTAAAGGCTCTCCGTAGCGATACAGCCAAAGAGGTCGCGGCGAATCTGTTGGACGTATTGGGGATCATAGGGGCACCACGAGTGCTGCAGAGCGGCAATGGGCGTAAGTTTGCCGAACAAGTTGTACATGAACTACGTTCGCTGTGGAATGATTTGTTCATACTGCACGGAGACGCATCTAAGGGTGAAGTTAGCTACAGGGATTTTAAGACCTTGCTCGAATCCTGGATGAGAAAAAATCCAACTAGGACCTGGTGCGAAGGGCTGAACTTCATACAGATCGTACACAACTCGACGTATCGCTGTCAGAACGGCAAGGTCCCATACGACGTATTGTTCAGGCAAAACGTACGCGAGAACTTTCAAGGTATAGAAAAAGATTTGGAGGGTCTGAGGACGGAAGAAGAATGGCTCAAACATTTGTCGAATAAGAGGGACGGAGATGGGGCTGCAATGACGGAAGACACGCAGAATACGTCAAATagtattaatCAGTACGAAGAAAACGAAAATGTACGAGATGCACAGAATCAAAACGCACTTTCGAAAGCCGACGATGTAAATATGTTCAGTTACGTGAACGTGAAGAATGAATCACTGGCgaataacgcgcgcgcgatcgattcGATGTCTACGGATGAAACAGAAAACAAAGTGAAAAATGAATTGAAGGTCAACGAAGATACTCAATCCCTCAAATGCAAGTACTGTCAAAAGCAGTACATGAAGGTAGGGCATTTGAAGAACCACATGAGAACTCACAAAGCGAAACAAGTTCTCCATTGTAAGCTGTGCAATAAAACATTTAGCGCTCCGAGATTGTACGCGAAGCACATGAAGCAATCACACGGACAGGATAAATTAGCTGATGAGGAAAGAGAGATACCGGTTAGTAGGAATACGAGATACAACGCCAATGCATTAACGGCTACATCTAACAAGGAAAGATCTGTGATTCAAACAATACACGAGACATCCGATCCCGGGAACAAAGATTGTAATTCGTCACTGGACACAAAAGAGTTTTCTGGCAAGGTCAGTAAGAGCTCAAACCAAACCGGCAGACGGAAGCTGCCTGCTGAGAGTCGCGTGTCGAAGGTACAATCTTTACAATGTACGTATTGCAAACAAAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGATCGCACACGAACGAACGGCCGTACGTATGCGAGGTGTGTAACAAGAGCTTCAAACAATTAGGCCATCTTAGTCAGCACTCACTGACCCATCACGACTACCGTTCGTTCCAGTGCACGGTGTGCGACGTAAAGTTCGACTCGCTGGATTTGCTGAAGCAACACGCGTCCTCGCACAAAGGCGGgacaacgatgacgacgacgacgacgacgacgtccaAGATACGCGACGTCTATCGCCTGTTCGAGTGCGACTGCTGCAAAAAAGTGTTCACGACGAAGAGCGTCCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTATGCGGCAAGCGATTCAAGCAGGCCGGTCACGTCAAGTCGCATATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACAGTCTGCTCGAAACGCTTCAGCTTGTCGAACTCGCTGAAGAAACACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGTTTCCTCGAGAAGCGCAACCTCAACGGCCACTTGCTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAACGTTACACCTTGGCAGACACTCTGCGCCGTCACGTTAGCGCCGCGCACGAGGACGGTCGTACGTATCAGTGCGAGATCTGTGCCAAAATGTTCAAGCAATTGGCACATCTATCGGTGCACAAGAAGGTGCACAACGACGAACGACCGTTCCAGTGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATCCACGCAAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCAACGTTCGTCAGGAAGACGAACCTGCAGACGCATATTTCGTCCGCGCACATGAACGAGCGTCCGTATTCCTGCACCATCTGCGGCAAGCGCTTCAAGCAGATCAGTCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAACCGGCTTGACAATCTGAAGAAGCATATGCGCCTCCATATGAAGAACAAGGAGTGA
Protein Sequence
MTKIIMNKEMPLSVGWMPQNAYMHNSLDHLLPGDRNQDFLIIKQEAEFFQSTLSSQSAQNKAHLQVLCKEEDKEIKQQNSYSDVLATPCQTNSLNRSPKRLTDVSEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDHSSKFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQVVHELRSLWNDLFILHGDASKGEVSYRDFKTLLESWMRKNPTRTWCEGLNFIQIVHNSTYRCQNGKVPYDVLFRQNVRENFQGIEKDLEGLRTEEEWLKHLSNKRDGDGAAMTEDTQNTSNSINQYEENENVRDAQNQNALSKADDVNMFSYVNVKNESLANNARAIDSMSTDETENKVKNELKVNEDTQSLKCKYCQKQYMKVGHLKNHMRTHKAKQVLHCKLCNKTFSAPRLYAKHMKQSHGQDKLADEEREIPVSRNTRYNANALTATSNKERSVIQTIHETSDPGNKDCNSSLDTKEFSGKVSKSSNQTGRRKLPAESRVSKVQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCDVKFDSLDLLKQHASSHKGGTTMTTTTTTTSKIRDVYRLFECDCCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYSCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01405941;
80% Identity
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