Tnyl038804.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax nylanderi
Gene Symbol
KRBA2
Assembly
GCA_030848795.1
Location
JASTWM010001539.1:1989289-1992220[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00018 0.029 16.1 4.5 2 23 379 400 378 400 0.97
2 15 0.00031 0.048 15.4 2.6 2 23 407 429 406 429 0.95
3 15 4.6e-06 0.00072 21.2 1.5 2 23 516 537 515 537 0.97
4 15 2e-05 0.0032 19.1 3.6 1 23 543 565 543 566 0.96
5 15 0.001 0.16 13.8 0.3 1 23 571 593 571 593 0.97
6 15 0.00032 0.05 15.4 3.4 1 23 611 633 611 633 0.97
7 15 1.5e-06 0.00024 22.6 1.2 1 23 639 661 639 661 0.97
8 15 1.2e-05 0.0019 19.8 2.4 1 23 667 689 667 689 0.98
9 15 0.0017 0.27 13.1 0.2 1 23 695 717 695 717 0.99
10 15 5.4e-05 0.0083 17.8 1.1 1 23 723 746 723 746 0.92
11 15 2.4e-05 0.0038 18.9 1.3 1 23 752 774 752 774 0.98
12 15 0.00053 0.083 14.7 4.7 1 23 780 802 780 802 0.98
13 15 6.8e-06 0.0011 20.6 0.4 1 23 808 831 808 831 0.97
14 15 7.4e-06 0.0012 20.5 0.8 1 23 837 859 837 859 0.96
15 15 1.2e-06 0.00018 23.0 4.8 1 23 865 887 865 887 0.99

Sequence Information

Coding Sequence
atgacaaaaataataatgaataaagaaATGCCGTTGAGCGTGGAATGGATGCCACAAAACGCGTACATGCACAATTCTTTGGATCACTTGCTGCCGGGAGACAGAAATCAGGACTTCTTGATCATAAAGCAGGAAATAAAGCAGGAAGCggaattttttcaaagtacCCTGAGCTCGCAATCTGCGCAAAACAAAGCGCATCTGCAAGTCTTATCTAAAGAGAAGGACAAGGAGATCAAGCAACAGAACAGCTATTCGGATGTATTAGCGACAGCCTGTCAAACGGACTCTTTAAATCGGTCGCCCAAAAGATTCACCGACGTTTcagagaaattatataataaaggtCGCATTGACGTAATAGAGATGACAATAGACCcgacatttaattataaatattttttcgtttatGAAGATCATTCGTCCAAGTTTGTCGTACTAAAGGCTCTCCGTAGCGATACAGCCAAAGAGGTCGCGGCGAATCTGTTAGACGTATTGGGGATCATAGGGGCACCACGAGTGCTTCAGAGCGGCAATGGGCGTAAGTTTGCCGAACAAGTTGTACGTGAACTACGTTCGCTGTGGAATGATTTGTTCATACTGCACGGGGACGCATCTAAGGGTGAAGTTAGCTACAGGGATTTTAAGACCTCGCTCGAATCCTGGATGAGAAAAAATCCAACTAGGACCTGGTGCGAAGGGCTGAACTTCATACAGATCGTTCATAACTCGACGTATCGCTGTCAGAACGGCAAGGTCCCATACGACGTATTGTTCAGGCAAAACGTACGCGAGAATTTTCAAGGTATAGAAAAAGATGTGGAGGGTCTGAGGACGGAAGAAGAATGGCTCAAACATTTGTCGAATAAGAAAGACGGAGATGGGGCTGCAATGACGGAAGACGCGCAGAATACGTCAAATagtattaatCAGTACGAAGAAAACGAAAATGTACGAGATACACAGAATCAAAACGCACTTTCGAAAGCCGACGATGTAAATATGTTCAGTTACGTGAACGTGAAGAATGAATCTCTGGCgaataacgcgcgcgcgatggaTTCGATGTCTACAGATGAAACAGAAAACCAAGCGAAAAATGAATTGAAGGTCAACGAAGATGCTCAATCCCTCAAATGCAAGTACTGTCAAAAGCAGTACATGAAGATAGGGCATTTGAAGAACCACATGAGAACTCACAAAGCGAAACAAGTACTCCATTGTAAGCTGTGCAATAAAACATTTAGCGTTCCGAGATTGTACGCGAAGCATATGAAGCAATCGCACGGACAGGATAAATTAGCTGtagaggaaagagagatacCGGTTAGCAGAAATACGAGAAACAACGCCAATGCATTAACGGCTACACTTAAGGAAAGATCAGTGATTCAAAAAACACACGAGACATCCGATCCCGGGAACAAAGATTGTGATTCGTCACTGGACACAAAAGAGTTTTCTGGCAAGGTCAGTAAGAGCTCGAACCAAACCGGCAGACGGAAGCTGCCTGCGGAGAGTCGCGTGTCGAAGGTACAATCTTTACAATGTACGTATTGCAAACAAAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGATCGCACACGAACGAACGGCCGTACGTGTGCGAGGTGTGTAACAAGAGCTTCAAACAATTAGGCCATCTTAGTCAGCACTCACTGACCCATCATGACTACCGTTCGTTCCAGTGCATGGTGTGCGACGTAAAGTTCGACTCGCTGGATTTGCTGAAGCAACACGCGTCCTCGCACAAAGGCaggacaacgacgacgacgtccaAGATACGCGACGTCTATCGCCTGTTCGAGTGCGACTGCTGCAAAAAAGTGTTCACGACGAAGAGCGTCCTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTATGCGGCAAGCGGTTCAAGCAGGCCGGTCACGTCAAGTCGCATATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACGGTCTGCTCGAAACGCTTCAGCTTGTCGAACTCGCTGAAGAAACACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGTTTCCTCGAGAAGCGCAACCTCAACGGCCACTTGCTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAACGTTACACCTTGGCAGACACTCTGCGCCGTCACGTTAGCGCCGCGCACGAGGACGGTCGTACGTATCAGTGCGAGATATGTGCCAAAATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAGAAGGTGCACAACGACGAACGACCGTTCCAGTGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCAACGTTCGTCAGGAAGACGAACCTGCAGACGCATATTTCGTCCGCGCACATGAACGAGCGTCCGTATTCCTGCACCATCTGCGGCAAGCGCTTCAAGCAGATCAGTCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTTGACAATCTGAAGAAGCATATGCGCCTCCATATGAAGAACAAGGAGTGA
Protein Sequence
MTKIIMNKEMPLSVEWMPQNAYMHNSLDHLLPGDRNQDFLIIKQEIKQEAEFFQSTLSSQSAQNKAHLQVLSKEKDKEIKQQNSYSDVLATACQTDSLNRSPKRFTDVSEKLYNKGRIDVIEMTIDPTFNYKYFFVYEDHSSKFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQVVRELRSLWNDLFILHGDASKGEVSYRDFKTSLESWMRKNPTRTWCEGLNFIQIVHNSTYRCQNGKVPYDVLFRQNVRENFQGIEKDVEGLRTEEEWLKHLSNKKDGDGAAMTEDAQNTSNSINQYEENENVRDTQNQNALSKADDVNMFSYVNVKNESLANNARAMDSMSTDETENQAKNELKVNEDAQSLKCKYCQKQYMKIGHLKNHMRTHKAKQVLHCKLCNKTFSVPRLYAKHMKQSHGQDKLAVEEREIPVSRNTRNNANALTATLKERSVIQKTHETSDPGNKDCDSSLDTKEFSGKVSKSSNQTGRRKLPAESRVSKVQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCMVCDVKFDSLDLLKQHASSHKGRTTTTTSKIRDVYRLFECDCCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYSCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01405941;
80% Identity
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