Basic Information

Insect: Synergus umbraculus
Gene Symbol: RREB1_1
Assembly: GCA_900474325.1
Location: UCOK01008922.1:31413-49112[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 1.8 9.7 0.1 1 23 46 68 46 68 0.97

2 14 0.0015 0.17 13.0 0.2 1 23 82 104 82 104 0.97

3 14 7.2e-06 0.00083 20.2 1.7 1 23 110 133 110 133 0.98

4 14 1.7 1.9e+02 3.3 0.9 1 19 297 315 297 317 0.90

5 14 0.0015 0.17 12.9 0.3 1 23 431 453 431 453 0.98

6 14 6.4e-06 0.00073 20.4 0.9 1 23 462 484 462 484 0.98

7 14 0.00025 0.029 15.4 1.4 1 23 490 513 490 513 0.97

8 14 0.00055 0.063 14.3 1.9 1 23 918 941 918 941 0.97

9 14 0.00071 0.082 13.9 0.3 2 23 1211 1232 1210 1232 0.97

10 14 1.4 1.6e+02 3.6 6.6 1 23 1238 1261 1238 1261 0.97

11 14 0.0069 0.79 10.8 1.5 1 23 1301 1325 1301 1325 0.97

12 14 1.2 1.4e+02 3.8 1.8 1 23 1407 1432 1407 1432 0.96

13 14 0.078 9 7.5 0.2 2 23 1477 1498 1476 1498 0.94

14 14 0.0035 0.4 11.8 4.1 3 23 1506 1526 1504 1526 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	1.8	9.7	0.1	1	23	46	68	46	68	0.97
2	14	0.0015	0.17	13.0	0.2	1	23	82	104	82	104	0.97
3	14	7.2e-06	0.00083	20.2	1.7	1	23	110	133	110	133	0.98
4	14	1.7	1.9e+02	3.3	0.9	1	19	297	315	297	317	0.90
5	14	0.0015	0.17	12.9	0.3	1	23	431	453	431	453	0.98
6	14	6.4e-06	0.00073	20.4	0.9	1	23	462	484	462	484	0.98
7	14	0.00025	0.029	15.4	1.4	1	23	490	513	490	513	0.97
8	14	0.00055	0.063	14.3	1.9	1	23	918	941	918	941	0.97
9	14	0.00071	0.082	13.9	0.3	2	23	1211	1232	1210	1232	0.97
10	14	1.4	1.6e+02	3.6	6.6	1	23	1238	1261	1238	1261	0.97
11	14	0.0069	0.79	10.8	1.5	1	23	1301	1325	1301	1325	0.97
12	14	1.2	1.4e+02	3.8	1.8	1	23	1407	1432	1407	1432	0.96
13	14	0.078	9	7.5	0.2	2	23	1477	1498	1476	1498	0.94
14	14	0.0035	0.4	11.8	4.1	3	23	1506	1526	1504	1526	0.98

Sequence Information

Coding Sequence: ATGGACGTTAAGGTCATTAGGAGAGAACCGGCATCCACGACAgTGAATCCAAAGATCGGCCTGTATCAGACACACAGCAGCGAGACACAAACTCACATTGCATCATCGCTATTGATTGATCAATCAGAAAGATCGCATCCTTGTCCAGCGTGCCCAACAGTTCTCCCAACAGTTCGGGACTTAACAAATCATCTGCGAAATCACAATTCGCCACGAAGTATCGACTCCAGCATCGACGAAGAATTCAGCTGCAGAGTATGTTACAAAGTACTCAGTTCGGCCAGTTCTCTAGACCGTCACGTTCTTGTGCATTCCGGTGAGCGGCCCTTCAAATGTAAAAAGTGCGACATGGCTTTCACCACCAACGGAAACATGACCCGACACTCAAAAACAGCTCACAATCATCTCTCGCCGAACAGTTGTTCAGATTCTGAAGCCAGCAATGACTCAGAGTCACcctcaaaaaaattcgaagaGTACAACAACAATGACATCGCCAAACGGAACTCGCCTGACCTCATCGACAAAATAGAGTCTCccaatttcatcaaaaaaagaaaatcgcTCGACTACACCGAGGACCTCAGCCTGCAGAAGAAATTCAAGGCTAACTTTTCAGAGAACCACAATTACAACTGCCATTCCGACTTTGAAAAGTGCGAACCCGACAACttatcattcaaaaaccaCAGGGTGCTGAATCTTAATCGATCAGAGAATAACTTCAACGAAAACTCTCTGCGAAATGTTGCGAGGAACTTGAGACACTCAGTTGAAGGTTTTACAGACTTGACTTTCGTTGATTTCACCTCGAAGAAATACCCTGTCATCGCGAGGGCAAAATGTGAGGAGTTCCTACACAGACCAACATCCGGAGATATGGCGAAGTTCCAGTGTTCAAAATGTCTCCGGGCTTTTCCATGCAAATCTGCTCTAGACTCACACGAACTGGACTGTGGACTTTCCAATGTTCAGTGGAAAGGTAGTGACGTTCAATCCAGAAGGGATGATTTTTTTGCAGGACTTAATCTACAAAACAAGGCAGCCATGACAGAAGCTAAAGAGGGGAAAGACCTCGCTGATATCCAGAGTATCATCAGTCTTACCTCGAGTCCGATTCTCCATAATTTTTCCAGATCCGATGCCAGTACTCCTGACAATTGCAGCAATAGAATCAATCAGAATGTTGGATCTTCTGGATCTTCAGGAACACTTTCGTCTGAGTATCATGAAGAGGAAACTCAAGATGCTTTTGCAGCTGAATTTAGGAAAATGAAGCTCAAGGGTGAGTTTCCTTGCAAGCTCTGCAAGGAAATCTTTCCCAACTTGAGGGCCTTGAAAGGACATAACAGGACCCACTTGGGAGTTGGACCTGGAATGCCCTATCCTTGTAATATCTGTCCCTACACGAGCACTGATAAGACAACCCTCACGAGGCATCTGAAGACGCACAATGGTGATCGACCCTTCGAGTGTGCTGAGTGCGGCTACGCTTTCACTACCAAGGCCAACTGCGAAAGGCACGTGAGGAATCGTCATGGGATTCATGACAAAAATGATGTTCAGAAGATGATCATTTATCATCCAACTGAGGACTCGACGAATGAAAGTCTGGATAGAAGCTCATCAAGAAGTGTCAAAGATGATGTTAGGAAGGCTCTTGTTTACCCCAAAGAGGAGCCAGTTCCCCCTAATCACTACTCCGTTCTGATGCAACCAGATATTAGGATAAAGGACGAGAGCAAGGTCATCAAGGAGATGAATTCGATAGGTCAGCTGAATCAGCTGAGCCACCTAAATCAATTGAAACTAAACGAAATCACTCGTCTAAATCAAATAAACCAAATGAACCAGTTCAACGTTCAAATGAATCCCTACGAAAAATCGGAAGTGTTTCCGAGGCCAAAATCAGTTCAACCTCTCGAGTTGACTTATGGAAGTTCCCCCCAGAATCTGATCACGAAATCTGAAGATTCCAAGGTAGATGAGGATTTCGAGTCGAGGTCGTCGGAGGACAGCGTATCTCTAGTCAATGAAACCAAACCGGACATACACCAAAGAATTCAAGCTAGTCCGATGAACCTGAAGAAAGTGAGAAATGATTCCCCCAACGTGACTTCGAGTGACGATGGACCCCTTGATCTCTCGATGGATGTTCTCGACCTGAgtaagaagtcaaagaatgtaGAAGTTATCCAGCAAAAGGAAGTGAACGAAAATTCCGAGGATCAGAACGAGAACCAAAAGGAACTTTACAACGCTGCGCATCCTCTTTTGCTGACAAGTGCTTTGTTAAAATCACATCAAGTTGGCTCCTCTTCCAGTCAATTCGAATCTTTGTATGCCAAGGCCCAAGCGAGCATCATCTACAACAATCTTGCTCTAGGATCAGCTGGCGCTGGGTTGATATCACCTTATTTTTTCAATCCAATTTTTGATCAAGGTTACGTGATGAAGGAAAGATTACAGAACGAACTGGCTAGAGGTCTTCAAACAAGTGGAGGTACTTTGGTTGAGCAGTCACTTGAAAATGCAGGATTCAATACCAGCTATCCTTCTGCAAGAAACTCCCAACAACTTGAAGAGGAGATGAGCTTTACAAATATGATGCAGCCAAAAATCTCGAGCAAGGTGATCTCACCCAGAGAGAGAATTAACGAATCACCTTCTTCGAATTCGGTCAAAATGGTAATTAAGAATGGTGTCCTCATGAGGAAGCAGAAGCAGAGGAGGTACAGAACTGAAAGACCTTTCACGTGTGAATATTGCTCAGCAAAGTTCACACTCAAAACTAATATGGAAAGACACATAAAGCAACAGCACAATTTATTGTGGTCTAAAAGACCTAGAGGACCTCATTCGACAAGAGGTCGACCTCCAGCGAGACCTCAAACGAGACCTCCAACGTTGCTGCAAGATATAGGCCAGGCTTCTCAGGCTTACTTGAACATAAGATCCCCATATGATGTCCCATTGCAAAAAGACGATCAGTCTGATTATGGAAAACATTCTATTTCTGATCAGGTCAAGTATGCAATCCTTGCTCAACAACTGAAGGGAAACAAGCCAGAGGAAAATGAAACTGATGAGGAGTTAATCATCGATGAAGAACCTGGTGCGGAACCTCGAGATCATACAAAGACTTTGAGCTTATTGAGAGGGAAGCTCGAAAGTAAttcagaaacaaaagaaaattacaaagaagATGATACAATGAATGATGCTGAACAACCCTTGGAGCCCAGGAGTGACATAACAGAAGAGAAGGAGGTTCTCTCGGATGATGAAAACCATGAGAGAAGAGCTGCTTCCGAAAACGAAACGATTTCCAATGAGGCCACTGAATTGGAAACCCCAGCAAACGAAGGAACTGTGAAAAATGAGGATGGGGCTGTAGATCTGGCCAGTGTTCCTAAACTGATTCATAATGCCTCACAAAATTATCATCAGTTCAAATCTCAGTATTTAAGTGACGAGGATGGTGCCGCTCACTCTATTAGTGATCACTCTGGAAACCGTTCCGGAAGTGATGAGAAATCAGAGAACTCTGCTATTTCCACTTCttccaaaagaaaaaagaagaagaagaaaaagaaggcTTCCGCTTATTCTATGGCACCTAACAGAGTAGAGTGTAAATACTGTAAAAGAGCATTCCCCTGGATTTCTTCATTGAGAAGACATATCCTCACCCACACTGGAGTCAAGCCTTACCGATGTGAGCATTGCATGTTGGATTTTACGACAAAGTCTAACTGTGATCGTCACTTGAATAGAAAACACAAGAGTATCCTTCAGCGAAATGCTAGAAACACGAGGAATTCTTCCTCTCCAGATGGTCAAGATATGAGAGTGACAAATAACAATACTTTTTCAACAAGAAATGTTCCAGAGAGACCCTACAAGTGTAATCAATGTCCTAGTTCGACTTTCGCAACCTTGGGGAATCTGAAGAAACACAGATCGACTAAACACTCCAGAGAGACGAATTCTAGATCTGAAACTTCTTGCAGTGACCCTCAGAATTCTGATAACTGTCAGAAACAGAATGATCAAAGTGGAGATGATTGTGGATCGTCGAGTTCCGAGAATATGGAGAATTCATCTGCTGTGGTGGAGGTTTCCAAGTCGAGTCAAAACACTCCCCCTTCGACGAATGAAAATGTAAGGTCGTGCAGGACCTCACCAACCTCTTCACCTGGACCAACAGACACGCCCTTCAAATGTCATATTCCAAACTGCGATAATGGGTTCGCTGATCGTCAGGACTGCTTGGATCATATCAAGATGAATCATGAGCGGGACTATGAGATCTTGGTTTCCAAGGGTGCTCTGCAGATGGGAATCCATGCTGCTGAGGAACAACCTCCACCGACTCAACATCCGAGCGATGGTCCCAGGTCCCTTGACTacaaagatagaaaggTGGTCTGTGCATTCTGCATGCGTCGATTCTGGTCAGCCGAAGATCTGCGTCGACATGTGAGAACTCACACAGGAGAAAAACCCTTCTGGTGTGACATTTGCGACCGGAGATTCACCCTGAAGCATAGTATGCTTCGTCACCGGAAGAAGCACGAGTCAGCGGACTCAACAATGTATGTTGGAAGTGGTGATGAGGAAATTTCTCCCAGCCACCCCCCTACAATCACTCCAAGAAGTCAGCAACAATCTCCAGCTCTAATTGCAGCGACCTCAGGAAATTCAATGATCCAAGAGAGAATGTCTTTGCCAACAGTAGCGACTGTAGCGACTGGAGATGCTGCACCTAGTGGACTGATGAGGTTCAACCCCTATGAAAAACTTACAACTTTAACGGGCAAATTATCTCAGCAGAGCAACTCTGACAACACTGAAAGTGGTAATGATCTGATCTCAAATTTACTGGGTATCAAGGATCCAGGGATTGTTGACAAAATGCTTCTTGCAACTCCCGATGATGCCGCAAAACTTTTAGGAGTCAAGGGTAACAACGAGTGA
Protein Sequence: MDVKVIRREPASTTVNPKIGLYQTHSSETQTHIASSLLIDQSERSHPCPACPTVLPTVRDLTNHLRNHNSPRSIDSSIDEEFSCRVCYKVLSSASSLDRHVLVHSGERPFKCKKCDMAFTTNGNMTRHSKTAHNHLSPNSCSDSEASNDSESPSKKFEEYNNNDIAKRNSPDLIDKIESPNFIKKRKSLDYTEDLSLQKKFKANFSENHNYNCHSDFEKCEPDNLSFKNHRVLNLNRSENNFNENSLRNVARNLRHSVEGFTDLTFVDFTSKKYPVIARAKCEEFLHRPTSGDMAKFQCSKCLRAFPCKSALDSHELDCGLSNVQWKGSDVQSRRDDFFAGLNLQNKAAMTEAKEGKDLADIQSIISLTSSPILHNFSRSDASTPDNCSNRINQNVGSSGSSGTLSSEYHEEETQDAFAAEFRKMKLKGEFPCKLCKEIFPNLRALKGHNRTHLGVGPGMPYPCNICPYTSTDKTTLTRHLKTHNGDRPFECAECGYAFTTKANCERHVRNRHGIHDKNDVQKMIIYHPTEDSTNESLDRSSSRSVKDDVRKALVYPKEEPVPPNHYSVLMQPDIRIKDESKVIKEMNSIGQLNQLSHLNQLKLNEITRLNQINQMNQFNVQMNPYEKSEVFPRPKSVQPLELTYGSSPQNLITKSEDSKVDEDFESRSSEDSVSLVNETKPDIHQRIQASPMNLKKVRNDSPNVTSSDDGPLDLSMDVLDLSKKSKNVEVIQQKEVNENSEDQNENQKELYNAAHPLLLTSALLKSHQVGSSSSQFESLYAKAQASIIYNNLALGSAGAGLISPYFFNPIFDQGYVMKERLQNELARGLQTSGGTLVEQSLENAGFNTSYPSARNSQQLEEEMSFTNMMQPKISSKVISPRERINESPSSNSVKMVIKNGVLMRKQKQRRYRTERPFTCEYCSAKFTLKTNMERHIKQQHNLLWSKRPRGPHSTRGRPPARPQTRPPTLLQDIGQASQAYLNIRSPYDVPLQKDDQSDYGKHSISDQVKYAILAQQLKGNKPEENETDEELIIDEEPGAEPRDHTKTLSLLRGKLESNSETKENYKEDDTMNDAEQPLEPRSDITEEKEVLSDDENHERRAASENETISNEATELETPANEGTVKNEDGAVDLASVPKLIHNASQNYHQFKSQYLSDEDGAAHSISDHSGNRSGSDEKSENSAISTSSKRKKKKKKKKASAYSMAPNRVECKYCKRAFPWISSLRRHILTHTGVKPYRCEHCMLDFTTKSNCDRHLNRKHKSILQRNARNTRNSSSPDGQDMRVTNNNTFSTRNVPERPYKCNQCPSSTFATLGNLKKHRSTKHSRETNSRSETSCSDPQNSDNCQKQNDQSGDDCGSSSSENMENSSAVVEVSKSSQNTPPSTNENVRSCRTSPTSSPGPTDTPFKCHIPNCDNGFADRQDCLDHIKMNHERDYEILVSKGALQMGIHAAEEQPPPTQHPSDGPRSLDYKDRKVVCAFCMRRFWSAEDLRRHVRTHTGEKPFWCDICDRRFTLKHSMLRHRKKHESADSTMYVGSGDEEISPSHPPTITPRSQQQSPALIAATSGNSMIQERMSLPTVATVATGDAAPSGLMRFNPYEKLTTLTGKLSQQSNSDNTESGNDLISNLLGIKDPGIVDKMLLATPDDAAKLLGVKGNNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00677055;
90% Identity: iTF_01392265; iTF_01390584; iTF_01393018; iTF_01393786;
80% Identity: -